BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0407500 Os10g0407500|Os10g0407500
         (517 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0407500  Exonuclease domain containing protein               969   0.0  
Os10g0426400                                                      213   3e-55
Os05g0102400                                                      204   2e-52
Os10g0407400  Conserved hypothetical protein                      112   8e-25

>Os10g0407500 Exonuclease domain containing protein
          Length = 517

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/489 (96%), Positives = 473/489 (96%)

Query: 29  EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
           EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN
Sbjct: 29  EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88

Query: 89  GITRXXXXXXXXXXXXXXXXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
           GITR                YSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP
Sbjct: 89  GITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148

Query: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
           KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208

Query: 209 ASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGGN 268
           ASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGGN
Sbjct: 209 ASLPGVLTVENLVERAITRSQANGAASPEVPKPVARSSPDSSKRQRTISRVDNAIQAGGN 268

Query: 269 QQSIDPATNKEPIELISNIEEMTLGSGIQIDASSSGFSGFLEPDDVSTESIQISVPSSYR 328
           QQSIDPATNKEPIELISNIEEMTLGSGIQIDASSSGFSGFLEPDDVSTESIQISVPSSYR
Sbjct: 269 QQSIDPATNKEPIELISNIEEMTLGSGIQIDASSSGFSGFLEPDDVSTESIQISVPSSYR 328

Query: 329 LTRKTSIKHKGSPIQLCCAGLRIQFGVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGI 388
           LTRKTSIKHKGSPIQLCCAGLRIQFGVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGI
Sbjct: 329 LTRKTSIKHKGSPIQLCCAGLRIQFGVSTKFLDSAGRPKLNILVDIPENLSKILEFCDGI 388

Query: 389 AQKSSQDSGSTSEWRPLIKKYGYVNCPTVRLHIPTIVSGEAATYGTEIYQKEASGNIQKL 448
           AQKSSQDSGSTSEWRPLIKKYGYVNCPTVRLHIPTIVSGEAATYGTEIYQKEASGNIQKL
Sbjct: 389 AQKSSQDSGSTSEWRPLIKKYGYVNCPTVRLHIPTIVSGEAATYGTEIYQKEASGNIQKL 448

Query: 449 VFSKVDVAELDSWFVRGNMVDAFFSLELYDYEENAGIRLVAKKLVAKCTTAKSNITGHQA 508
           VFSKVDVAELDSWFVRGNMVDAFFSLELYDYEENAGIRLVAKKLVAKCTTAKSNITGHQA
Sbjct: 449 VFSKVDVAELDSWFVRGNMVDAFFSLELYDYEENAGIRLVAKKLVAKCTTAKSNITGHQA 508

Query: 509 IFKKTMEKI 517
           IFKKTMEKI
Sbjct: 509 IFKKTMEKI 517



>Os10g0426400 
          Length = 382

 Score =  213 bits (542), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 144/209 (68%), Gaps = 22/209 (10%)

Query: 307 GFLEPDDVSTESIQISVPSS------------------YRLTRKTSIKHKGSPIQLCCAG 348
           GFL P+D+S E IQ+S+  S                  Y+      I+H  +P+QL C G
Sbjct: 176 GFLNPNDISLEFIQVSISFSSCLGKRSLTSGLRTNSLPYQFEWSLCIEHNDNPLQLRCIG 235

Query: 349 LRIQFGVSTKFLDSAGRP-KLNILVDIPENLSKILEFCDGIAQKSSQDSGSTSEWRPLIK 407
           LR+++ V   + DS GRP KL+I+VDIPENL ++LEFCD IA+ + +  GS SEWR +IK
Sbjct: 236 LRVRYEVYL-YQDSEGRPNKLSIVVDIPENLRQVLEFCDEIAEITFRKFGSNSEWRQVIK 294

Query: 408 KYGYVNCPTVRLHIPTIVSGEAATYGTEIYQKEASGNIQKLVFSKVDVAELDSWFVRGNM 467
           +YG  N P+VRL+IP + SG+ ATY TEIY KEASGNI+K  FSK DVAEL+  F RG+M
Sbjct: 295 EYG--NRPSVRLNIPIVGSGDDATYATEIYLKEASGNIRKKDFSKADVAELEFMFFRGDM 352

Query: 468 VDAFFSLELYDYEENAGIRLVAKKLVAKC 496
           VDAFFS+ELYDY+ NAGIRLVAKKLV  C
Sbjct: 353 VDAFFSVELYDYKNNAGIRLVAKKLVVHC 381




 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 123/170 (72%), Gaps = 6/170 (3%)

Query: 48  ALLEFGAILVCPRRLVVVGS-YATLVRPGDLGVVSAASVRCNGITRXXXXXXXXXXXXXX 106
            LLEFG+I +CPR+LV V   + TLVRP DLGVV+ A  R  GITR              
Sbjct: 10  TLLEFGSIFLCPRQLVEVAEPFVTLVRPSDLGVVTEALER-KGITRGALEHAPPFCDVAN 68

Query: 107 XXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMIDTLPLLTQKFGRRA 166
             ++VLH    GR+WAGHNI+ FD   IREAFAEIGR PPEPKGMIDTLPLLTQ FGRRA
Sbjct: 69  NIHNVLH----GRIWAGHNIISFDSEIIREAFAEIGRSPPEPKGMIDTLPLLTQTFGRRA 124

Query: 167 GDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLPGVLT 216
           G+MKMA+LA+YF LG Q HRSL DVRMNL+VLK C+TVLFLE + P +L+
Sbjct: 125 GNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFLEDNFPELLS 174



>Os05g0102400 
          Length = 252

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/209 (52%), Positives = 136/209 (65%), Gaps = 10/209 (4%)

Query: 29  EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
           E+ FFDVET+         ++LEFGAI+VCPRRLV V SY T++RPGD+   SA S R  
Sbjct: 5   EMVFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDM---SAVSKRFA 61

Query: 89  GITRXXXXXXXXXXXXXXXXYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
            +                  + VL     GRVWAGHNI RFD  RIREAFA IGR  PEP
Sbjct: 62  AMVDVDVASAPSFDQVAERIFGVLD----GRVWAGHNIQRFDCHRIREAFAAIGRAAPEP 117

Query: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
             ++D+L +L   FGRRAGD+KMA+LA+YFG+G+QSHRSLDD RMNLEVLK CAT+L LE
Sbjct: 118 VAIVDSLNVLAHDFGRRAGDLKMATLASYFGIGKQSHRSLDDARMNLEVLKRCATLLLLE 177

Query: 209 ASL-PGVLTVENLVERAITRSQANGAASP 236
           ++L PG+L   +    +ITR ++N    P
Sbjct: 178 STLPPGML--HSSAAGSITRKRSNHQEEP 204



>Os10g0407400 Conserved hypothetical protein
          Length = 109

 Score =  112 bits (279), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 414 CPTVR-LHIPTIVSGEAATYGTEIYQKEASGNIQKLVFSKVDVAELDSWFVRGNMVDAFF 472
           C TV  L IP I SG+ ATY  EIY KEASGNI+K  FSK DVAEL+  F RG+MVDAFF
Sbjct: 25  CSTVLFLVIPIIGSGDDATYAIEIYLKEASGNIRKKDFSKADVAELEFMFFRGDMVDAFF 84

Query: 473 SLELYDYEENAGIRLVAKKLVAKC 496
           S+ELY+Y+ NAGIRLVAKKLV  C
Sbjct: 85  SVELYNYKNNAGIRLVAKKLVVHC 108



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,418,165
Number of extensions: 622684
Number of successful extensions: 1773
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1766
Number of HSP's successfully gapped: 5
Length of query: 517
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 412
Effective length of database: 11,553,331
Effective search space: 4759972372
Effective search space used: 4759972372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)