BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0407400 Os10g0407400|J100026L13
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0407400  Conserved hypothetical protein                      221   1e-58
Os10g0426400                                                      160   2e-40
Os10g0407500  Exonuclease domain containing protein               112   7e-26

>Os10g0407400 Conserved hypothetical protein
          Length = 109

 Score =  221 bits (562), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MTIICSIICRSLYDVRMNLDVLKCCSTVLFLVIPIIGSGDDATYAIEIYLKEASGNIRKK 60
           MTIICSIICRSLYDVRMNLDVLKCCSTVLFLVIPIIGSGDDATYAIEIYLKEASGNIRKK
Sbjct: 1   MTIICSIICRSLYDVRMNLDVLKCCSTVLFLVIPIIGSGDDATYAIEIYLKEASGNIRKK 60

Query: 61  DFSKADVAELEFMFFRGDMVDAFFSVELYNYKNNAGIRLVAKKLVVHCR 109
           DFSKADVAELEFMFFRGDMVDAFFSVELYNYKNNAGIRLVAKKLVVHCR
Sbjct: 61  DFSKADVAELEFMFFRGDMVDAFFSVELYNYKNNAGIRLVAKKLVVHCR 109



>Os10g0426400 
          Length = 382

 Score =  160 bits (405), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/79 (94%), Positives = 77/79 (97%)

Query: 31  LVIPIIGSGDDATYAIEIYLKEASGNIRKKDFSKADVAELEFMFFRGDMVDAFFSVELYN 90
           L IPI+GSGDDATYA EIYLKEASGNIRKKDFSKADVAELEFMFFRGDMVDAFFSVELY+
Sbjct: 304 LNIPIVGSGDDATYATEIYLKEASGNIRKKDFSKADVAELEFMFFRGDMVDAFFSVELYD 363

Query: 91  YKNNAGIRLVAKKLVVHCR 109
           YKNNAGIRLVAKKLVVHCR
Sbjct: 364 YKNNAGIRLVAKKLVVHCR 382



>Os10g0407500 Exonuclease domain containing protein
          Length = 517

 Score =  112 bits (279), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 25  CSTVLFLVIPIIGSGDDATYAIEIYLKEASGNIRKKDFSKADVAELEFMFFRGDMVDAFF 84
           C TV  L IP I SG+ ATY  EIY KEASGNI+K  FSK DVAEL+  F RG+MVDAFF
Sbjct: 414 CPTVR-LHIPTIVSGEAATYGTEIYQKEASGNIQKLVFSKVDVAELDSWFVRGNMVDAFF 472

Query: 85  SVELYNYKNNAGIRLVAKKLVVHC 108
           S+ELY+Y+ NAGIRLVAKKLV  C
Sbjct: 473 SLELYDYEENAGIRLVAKKLVAKC 496



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,338,222
Number of extensions: 115989
Number of successful extensions: 242
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 3
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)