BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0406600 Os10g0406600|009-071-B02
         (90 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0239000  Complex 1 LYR protein family protein                139   5e-34
Os10g0406600  Complex 1 LYR protein family protein                119   4e-28
Os03g0257150                                                       66   6e-12

>Os08g0239000 Complex 1 LYR protein family protein
          Length = 90

 Score =  139 bits (350), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 73/90 (81%)

Query: 1  MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRXXXXXXXXXXXXXXX 60
          MA APTRAEALSLFRSLLRTARQFSDYNIREY RRRAADAFRENR               
Sbjct: 1  MAVAPTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDTAAAAAAFADG 60

Query: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90
          KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ
Sbjct: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90



>Os10g0406600 Complex 1 LYR protein family protein
          Length = 90

 Score =  119 bits (299), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 75/90 (83%)

Query: 1  MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRXXXXXXXXXXXXXXX 60
          MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENR               
Sbjct: 1  MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADG 60

Query: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90
          KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ
Sbjct: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90



>Os03g0257150 
          Length = 66

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 21 ARQFSDYNIREYARRRAADAFRENRXXXXXXXXXXXXXXXKKQLEVAKRQAVVYSLYAPK 80
          A Q S+YNI EY R R      +                 KKQL+VAKR AVVYSLYAPK
Sbjct: 2  AWQLSNYNIHEYTRCRV-----QRMPSARTVPLATAFADGKKQLDVAKRHAVVYSLYAPK 56

Query: 81 AKSIMEMKLQ 90
          AKSIMEMKLQ
Sbjct: 57 AKSIMEMKLQ 66



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.128    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,755,686
Number of extensions: 35559
Number of successful extensions: 92
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)