Os08g0239000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Complex 1 LYR protein family protein.
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Os08g0239000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Complex 1 LYR protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.65 | 0.49 | 7.81 | -3.04 | 0.732 | 1.39 | -0.11 | -0.716 | -0.978 | 17.2 | 23.53 | 1473 | -- | -- |
| 108.77 | 0.486 | 7.79 | -2.85 | 0.722 | 1.37 | -0.116 | -- | -0.971 | 17.2 | 22.76 | 1498 | -- | -- |
| 108.66 | 0.485 | 7.81 | -3.04 | 0.743 | 1.39 | -- | -0.705 | -0.983 | 17.1 | 23.41 | 1450 | -- | -- |
| 108.75 | 0.486 | 7.79 | -2.83 | 0.738 | 1.34 | -- | -- | -0.954 | 17.2 | 22.79 | 1457 | -- | -- |
| 119.54 | 0.509 | 7.81 | -2.99 | -- | 1.84 | -- | -1.17 | -1.04 | -- | 20.91 | 431 | -- | -- |
| 176.6 | 0.623 | 7.72 | -2.35 | 0.672 | -- | -0.363 | -- | -0.66 | 17.6 | -- | -- | -- | -- |
| 176.91 | 0.623 | 7.73 | -2.34 | 0.67 | -- | -- | -- | -0.662 | 17.5 | -- | -- | -- | -- |
| 120.42 | 0.511 | 7.78 | -2.77 | -- | 1.76 | -- | -- | -0.978 | -- | 20.6 | 476 | -- | -- |
| 299.27 | 0.806 | 7.65 | -- | 0.769 | 0.659 | -- | -- | -0.341 | 17.1 | 27.7 | 1383 | -- | -- |
| 200.25 | 0.661 | 7.72 | -2.37 | -- | -- | -- | -- | -0.678 | -- | -- | -- | -- | -- |
| 321.82 | 0.839 | 7.67 | -- | 0.709 | -- | -- | -- | -0.4 | 17.4 | -- | -- | -- | -- |
| 309.13 | 0.819 | 7.69 | -- | -- | 1.16 | -- | -- | -0.567 | -- | 22 | 368 | -- | -- |
| 348.02 | 0.871 | 7.66 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 75 | 107.57 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 383 | 109.30 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 604 | 110.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 676 | 111.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 767 | 111.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 881 | 112.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 5 |