BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0239000 Os08g0239000|AK062875
         (90 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0239000  Complex 1 LYR protein family protein                162   7e-41
Os10g0406600  Complex 1 LYR protein family protein                119   5e-28
Os03g0257150                                                       77   3e-15

>Os08g0239000 Complex 1 LYR protein family protein
          Length = 90

 Score =  162 bits (409), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/90 (91%), Positives = 82/90 (91%)

Query: 1  MAVAPTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDTXXXXXXXXDG 60
          MAVAPTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDT        DG
Sbjct: 1  MAVAPTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDTAAAAAAFADG 60

Query: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90
          KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ
Sbjct: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90



>Os10g0406600 Complex 1 LYR protein family protein
          Length = 90

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 79/90 (87%)

Query: 1  MAVAPTRAEALSLFRSLLRTARQFSDYNIREYTRRRAADAFRENRALGDTXXXXXXXXDG 60
          MA APTRAEALSLFRSLLRTARQFSDYNIREY RRRAADAFRENRALGD         DG
Sbjct: 1  MAAAPTRAEALSLFRSLLRTARQFSDYNIREYARRRAADAFRENRALGDAVAAAAVFADG 60

Query: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90
          KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ
Sbjct: 61 KKQLEVAKRQAVVYSLYAPKAKSIMEMKLQ 90



>Os03g0257150 
          Length = 66

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 21 ARQFSDYNIREYTRRRAADAFRENRALGDTXXXXXXXXDGKKQLEVAKRQAVVYSLYAPK 80
          A Q S+YNI EYTR R      +      T        DGKKQL+VAKR AVVYSLYAPK
Sbjct: 2  AWQLSNYNIHEYTRCRV-----QRMPSARTVPLATAFADGKKQLDVAKRHAVVYSLYAPK 56

Query: 81 AKSIMEMKLQ 90
          AKSIMEMKLQ
Sbjct: 57 AKSIMEMKLQ 66



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,971,863
Number of extensions: 48040
Number of successful extensions: 85
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 90
Length of database: 17,035,801
Length adjustment: 60
Effective length of query: 30
Effective length of database: 13,902,961
Effective search space: 417088830
Effective search space used: 417088830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)