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Os10g0406600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Complex 1 LYR protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0138) R2 : 0.655
β1 : 0.729 (0.0506) R2dD : 0.163 R2D : 0.129
β2 : 0.815 (0.0329) R2dC : 0.467 R2C : 0.46
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.239 (0.0295) R2dN8 : 0.0667 R2N8 : 0.017
σ : 0.26
deviance : 30.78
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_____
C
peak time of C : 23.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.71 0.243 12.5 0.921 0.731 -0.573 -0.305 1.5 0.29 22.4 26.13 12 -- --
27.31 0.245 12.6 0.773 0.742 -0.442 -0.4 -- 0.252 22.5 26.3 18 -- --
27.04 0.242 12.5 0.938 0.734 -0.588 -- 1.79 0.287 22.4 26.3 10 -- --
27.97 0.248 12.6 0.788 0.744 -0.437 -- -- 0.253 22.5 26.3 18 -- --
56.43 0.35 12.5 1.09 -- -0.893 -- 1.99 0.38 -- 24.64 3 -- --
30.24 0.258 12.6 0.714 0.814 -- -0.356 -- 0.238 23.1 -- -- -- --
30.78 0.26 12.6 0.729 0.815 -- -- -- 0.239 23.1 -- -- -- --
57.68 0.354 12.5 0.909 -- -0.768 -- -- 0.376 -- 20.84 2 -- --
43.8 0.308 12.6 -- 0.787 -0.256 -- -- 0.162 22.9 26.68 2 -- --
72.26 0.397 12.5 0.748 -- -- -- -- 0.246 -- -- -- -- --
44.78 0.313 12.6 -- 0.822 -- -- -- 0.158 23.2 -- -- -- --
77.13 0.409 12.6 -- -- -0.628 -- -- 0.209 -- 24.6 2 -- --
87.01 0.435 12.6 -- -- -- -- -- 0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 26.50 temperature 25 10 > th dose dependent sin 2 NA
4 26.57 atmosphere 1005 10 > th dose dependent rect. 13 10
7 26.63 temperature 25 10 > th dose dependent rect. 23 21
10 26.67 temperature 25 10 > th dose dependent rect. 3 17
14 26.68 temperature 25 10 > th dose dependent rect. 21 23
16 26.69 atmosphere 1005 10 > th dose dependent rect. 15 8
30 26.80 temperature 15 10 > th dose dependent sin 2 NA
55 26.88 temperature 30 720 > th dose independent rect. 13 1
71 26.92 temperature 15 270 > th dose dependent rect. 4 12
72 26.92 temperature 25 10 > th dose dependent rect. 10 23
74 26.93 temperature 30 10 < th dose dependent rect. 2 15
78 26.94 temperature 25 10 > th dose dependent rect. 1 23
79 26.95 temperature 10 720 > th dose dependent rect. 3 6
83 26.95 temperature 25 10 > th dose dependent rect. 4 20
110 27.00 temperature 25 10 > th dose dependent no NA NA
111 27.00 temperature 20 720 > th dose dependent rect. 3 4
134 27.02 atmosphere 1005 270 > th dose dependent rect. 13 7
146 27.04 humidity 70 1440 > th dose independent rect. 17 1
153 27.05 temperature 30 10 < th dose dependent sin 1 NA
155 27.05 wind 9 4320 > th dose dependent rect. 13 1
167 27.06 temperature 30 10 < th dose independent rect. 11 10
174 27.06 temperature 30 10 < th dose dependent rect. 2 19
176 27.06 temperature 25 10 > th dose dependent rect. 8 23
181 27.07 temperature 30 10 < th dose dependent rect. 24 21
182 27.07 temperature 25 10 > th dose dependent rect. 17 23
189 27.08 temperature 25 10 > th dose dependent rect. 12 23
195 27.09 temperature 25 10 > th dose dependent rect. 19 23
196 27.10 temperature 30 270 < th dose independent rect. 23 20
225 27.14 atmosphere 1005 270 > th dose dependent rect. 15 4
245 27.17 temperature 30 10 < th dose dependent rect. 2 17
246 27.17 temperature 30 10 < th dose dependent rect. 24 17
253 27.18 temperature 30 10 < th dose dependent rect. 2 12
302 27.24 temperature 30 10 < th dose independent rect. 11 23
377 27.30 temperature 30 720 > th dose independent rect. 8 6
382 27.30 temperature 30 270 < th dose independent rect. 9 10
454 27.34 atmosphere 1005 720 > th dose independent rect. 15 4
464 27.35 humidity 70 1440 < th dose independent rect. 16 1
473 27.35 temperature 25 30 > th dose dependent rect. 18 12
514 27.37 temperature 25 30 > th dose dependent rect. 18 10
542 27.39 temperature 25 30 > th dose dependent rect. 18 8
547 27.39 temperature 25 10 > th dose dependent rect. 14 23
568 27.41 temperature 30 720 < th dose independent rect. 21 16
569 27.41 atmosphere 1000 30 > th dose independent rect. 11 23
599 27.43 temperature 30 14400 > th dose independent rect. 16 1
601 27.43 temperature 30 14400 < th dose independent rect. 15 2
616 27.44 temperature 25 270 > th dose independent rect. 3 8
618 27.44 atmosphere 1005 90 > th dose independent rect. 13 15
619 27.44 radiation 10 30 > th dose independent rect. 12 23
633 27.44 humidity 70 10 > th dose dependent rect. 24 21
635 27.45 atmosphere 1005 720 > th dose independent rect. 15 2
658 27.46 temperature 30 720 < th dose independent rect. 19 20
678 27.47 temperature 30 720 < th dose independent rect. 9 1
710 27.47 temperature 30 10 < th dose dependent rect. 24 23
714 27.48 temperature 30 14400 > th dose independent rect. 15 18
724 27.49 humidity 70 10 < th dose independent rect. 12 23
729 27.49 temperature 25 30 > th dose dependent rect. 18 14
738 27.50 temperature 30 14400 < th dose independent rect. 15 18
754 27.51 temperature 20 14400 > th dose independent rect. 20 5
775 27.51 humidity 60 10 > th dose dependent rect. 9 12
787 27.52 temperature 20 14400 > th dose independent rect. 21 3
794 27.52 temperature 30 14400 < th dose independent rect. 15 7
797 27.52 temperature 30 14400 < th dose independent rect. 15 9
804 27.52 temperature 30 14400 < th dose independent rect. 15 14
814 27.52 temperature 25 4320 > th dose dependent rect. 7 1
828 27.53 temperature 30 720 < th dose independent sin 7 NA
842 27.53 temperature 20 14400 > th dose independent rect. 13 12
868 27.54 temperature 20 14400 > th dose independent rect. 16 9
873 27.54 temperature 25 90 > th dose independent rect. 16 11
875 27.54 temperature 25 270 < th dose independent rect. 24 15
877 27.54 radiation 1 43200 < th dose dependent rect. 24 1
882 27.54 temperature 20 720 > th dose dependent rect. 23 10
893 27.55 temperature 20 14400 < th dose independent rect. 20 5
932 27.55 temperature 10 10 > th dose dependent rect. 21 23
936 27.56 atmosphere 1005 90 > th dose independent rect. 15 13
984 27.58 temperature 20 14400 > th dose independent sin 16 NA
997 27.58 temperature 30 720 < th dose independent rect. 24 12