BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0401900 Os10g0401900|Os10g0401900
         (183 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0401900  Conserved hypothetical protein                      310   5e-85
Os10g0395700                                                      249   1e-66
Os01g0339500  Conserved hypothetical protein                      247   3e-66
Os10g0402100  No apical meristem (NAM) protein domain contai...   150   5e-37

>Os10g0401900 Conserved hypothetical protein
          Length = 183

 Score =  310 bits (793), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 156/183 (85%)

Query: 1   MADQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPN 60
           MADQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPN
Sbjct: 1   MADQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPN 60

Query: 61  GGLVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMTXXXXXXXXXXXVDHHHRLSPPHDA 120
           GGLVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMT           VDHHHRLSPPHDA
Sbjct: 61  GGLVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMTPKKSSPAPPPAVDHHHRLSPPHDA 120

Query: 121 AGYNGGIXXXXXXXXXXXXXXXXLLVDGEDGYGAMADSNDTQLGGTEFDTERIAEMVKVQ 180
           AGYNGGI                LLVDGEDGYGAMADSNDTQLGGTEFDTERIAEMVKVQ
Sbjct: 121 AGYNGGIQAQHENQHHPQEPQPALLVDGEDGYGAMADSNDTQLGGTEFDTERIAEMVKVQ 180

Query: 181 IRG 183
           IRG
Sbjct: 181 IRG 183



>Os10g0395700 
          Length = 532

 Score =  249 bits (635), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 135/188 (71%), Gaps = 11/188 (5%)

Query: 1   MADQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPN 60
           MADQANMASTSQASTPSSELLQDWYDEFEITYGAV PPSPSTISW APQSSP GWWPSPN
Sbjct: 290 MADQANMASTSQASTPSSELLQDWYDEFEITYGAVAPPSPSTISWVAPQSSPTGWWPSPN 349

Query: 61  GGLVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMTXXXXXXXXXXXVDHHHRLSPPHDA 120
           GG VQHDGYL MAADPT YMLE+LLPTAAIPPEPM            VDHHHRLSPPHDA
Sbjct: 350 GGPVQHDGYLGMAADPTSYMLENLLPTAAIPPEPMMPPTSSPAPPPAVDHHHRLSPPHDA 409

Query: 121 AG----------YNGGIXXXXXXXXXXXXXXXXLLVDGEDGYGAMADSNDTQLGGTEFDT 170
           AG          YNGG+                 LVD EDGY AMA  +D QLGG E DT
Sbjct: 410 AGSNYNHPELADYNGGVQAQHEHQYHPQEPQAS-LVDAEDGYSAMAGGDDAQLGGAELDT 468

Query: 171 ERIAEMVK 178
           ERIAEMV 
Sbjct: 469 ERIAEMVN 476



>Os01g0339500 Conserved hypothetical protein
          Length = 460

 Score =  247 bits (631), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 134/194 (69%), Positives = 140/194 (72%), Gaps = 11/194 (5%)

Query: 1   MADQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPN 60
           MADQANMASTSQASTPSSELLQDWYDEFEITYGAV PPSPSTISWE PQSSP GWWPSPN
Sbjct: 216 MADQANMASTSQASTPSSELLQDWYDEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPN 275

Query: 61  GGLVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMTXXXXXXXXXXXVDHHHRLSPPHDA 120
           G  VQHDGYL MAA+PT YMLEH LPTAAIPPEPMT           VD+HHRLSPPHDA
Sbjct: 276 GEPVQHDGYLGMAANPTSYMLEHPLPTAAIPPEPMTPPTSSPAPPPAVDNHHRLSPPHDA 335

Query: 121 ----------AGYNGGIXXXXXXXXXXXXXXXXLLVDGEDGYGAMADSN-DTQLGGTEFD 169
                     AGYNGG+                LLVDGEDGYGA+AD + DTQLG  E D
Sbjct: 336 AGSNYNHPELAGYNGGVQAQHEHQHQPQEPQPALLVDGEDGYGAIADGDGDTQLGVAELD 395

Query: 170 TERIAEMVKVQIRG 183
           TERIAEMV   + G
Sbjct: 396 TERIAEMVNHIMDG 409



>Os10g0402100 No apical meristem (NAM) protein domain containing protein
          Length = 535

 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 102/177 (57%), Gaps = 13/177 (7%)

Query: 1   MADQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPN 60
           MADQANMASTSQAS PSSEL QDWYDE+E+ YGA  PPSPSTIS  A  SSP  WWPS  
Sbjct: 296 MADQANMASTSQASAPSSELPQDWYDEYEVAYGAAAPPSPSTISCAALPSSPTAWWPSSI 355

Query: 61  GGLVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMTXXXXXXXXXXXVDHHHRLSPPHDA 120
           GG VQHDGYL MA   +   LEHLLP+AAIPPEPM             D       P + 
Sbjct: 356 GGPVQHDGYLGMADPASCNTLEHLLPSAAIPPEPMAPPKNSPAAPPPADAGGNYDHP-EL 414

Query: 121 AGYNGGIXXXXXXXXXXXXXXXXLLVDGEDGYGAMADSNDTQLGGTEFDTERIAEMV 177
           A Y GG+                 L DG DG   +      +LG  EFD+ER+AEM+
Sbjct: 415 ADYGGGVQAQHEHHQPQE------LTDGADGDAQL------ELGAAEFDSERVAEMI 459



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,875,352
Number of extensions: 302094
Number of successful extensions: 831
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 4
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)