Os10g0401900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0401900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.47 | 0.547 | 5.61 | -1.08 | 1.06 | -1.58 | -0.58 | -0.464 | 0.0718 | 23.5 | 23.13 | 3275 | -- | -- |
| 135.66 | 0.542 | 5.62 | -1.12 | 1.07 | -1.45 | -0.598 | -- | 0.0629 | 23.4 | 23.55 | 3231 | -- | -- |
| 136.9 | 0.545 | 5.62 | -1.06 | 1.06 | -1.57 | -- | -0.427 | 0.0734 | 23.4 | 23.18 | 3275 | -- | -- |
| 137.05 | 0.545 | 5.63 | -1.1 | 1.06 | -1.45 | -- | -- | 0.0542 | 23.4 | 23.61 | 3227 | -- | -- |
| 179.97 | 0.625 | 5.63 | -1.13 | -- | -1.95 | -- | 0.8 | -0.0206 | -- | 29.8 | 897 | -- | -- |
| 167.51 | 0.607 | 5.55 | -0.462 | 1.08 | -- | -0.579 | -- | 0.406 | 23.5 | -- | -- | -- | -- |
| 168.93 | 0.609 | 5.55 | -0.437 | 1.09 | -- | -- | -- | 0.409 | 23.4 | -- | -- | -- | -- |
| 180.64 | 0.626 | 5.62 | -0.97 | -- | -1.97 | -- | -- | 0.00922 | -- | 29.59 | 893 | -- | -- |
| 156.51 | 0.583 | 5.58 | -- | 1.03 | -0.933 | -- | -- | 0.272 | 23.5 | 28.24 | 1915 | -- | -- |
| 242.8 | 0.728 | 5.52 | -0.409 | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
| 173.97 | 0.617 | 5.54 | -- | 1.08 | -- | -- | -- | 0.458 | 23.4 | -- | -- | -- | -- |
| 202.39 | 0.663 | 5.57 | -- | -- | -1.56 | -- | -- | 0.195 | -- | 29.7 | 872 | -- | -- |
| 247.21 | 0.734 | 5.51 | -- | -- | -- | -- | -- | 0.465 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.34 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 15 |
| 2 | 130.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 6 | 131.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 21 | 132.27 | temperature | 15 | 720 | > th | dose dependent | sin | 15 | NA |
| 53 | 133.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 74 | 134.42 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 7 |
| 95 | 135.14 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 100 | 135.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 17 |
| 103 | 135.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 113 | 135.51 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 12 |
| 127 | 135.63 | temperature | 25 | 4320 | < th | dose dependent | sin | 23 | NA |
| 142 | 135.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 8 | 16 |
| 172 | 136.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 7 |
| 199 | 136.13 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 10 |
| 240 | 136.29 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 253 | 136.34 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 271 | 136.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 20 |
| 291 | 136.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 301 | 136.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 15 |
| 310 | 136.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 343 | 136.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 346 | 136.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 353 | 136.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 19 |
| 358 | 136.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 20 |
| 389 | 136.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 427 | 136.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 444 | 136.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 21 |
| 506 | 137.01 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 513 | 137.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 516 | 137.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 21 |
| 527 | 137.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 555 | 137.10 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 581 | 137.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 23 |
| 634 | 137.22 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 694 | 137.31 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 698 | 137.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 700 | 137.32 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 703 | 137.33 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 744 | 137.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 753 | 137.40 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 773 | 137.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 783 | 137.45 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 792 | 137.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 816 | 137.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 921 | 137.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 933 | 137.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 944 | 137.64 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 997 | 137.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 1 |