Os01g0339500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0339500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.03 | 0.714 | 6.44 | -4.61 | 0.906 | -4.38 | -0.505 | 3.07 | -0.92 | 3.21 | 28.75 | 1417 | -- | -- |
| 238.78 | 0.72 | 6.37 | -3.88 | 0.856 | -4.41 | -0.565 | -- | -0.73 | 3.38 | 26.95 | 1360 | -- | -- |
| 231.65 | 0.709 | 6.43 | -4.54 | 0.874 | -4.44 | -- | 2.89 | -0.913 | 3.27 | 28.04 | 1383 | -- | -- |
| 238.7 | 0.72 | 6.36 | -3.96 | 0.833 | -4.66 | -- | -- | -0.789 | 3.44 | 26.86 | 1352 | -- | -- |
| 259.87 | 0.751 | 6.44 | -4.58 | -- | -4.68 | -- | 3.12 | -0.945 | -- | 28.21 | 1194 | -- | -- |
| 549.97 | 1.1 | 6.13 | -2.55 | 1.12 | -- | -0.628 | -- | 0.256 | 3.2 | -- | -- | -- | -- |
| 551.25 | 1.1 | 6.12 | -2.53 | 1.12 | -- | -- | -- | 0.26 | 3.23 | -- | -- | -- | -- |
| 267.47 | 0.762 | 6.37 | -3.96 | -- | -4.87 | -- | -- | -0.814 | -- | 27.25 | 1196 | -- | -- |
| 581.81 | 1.12 | 6.17 | -- | 1.06 | -2.83 | -- | -- | 0.021 | 4.89 | 25.8 | 726 | -- | -- |
| 622.12 | 1.17 | 6.12 | -2.49 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 720.48 | 1.26 | 6.06 | -- | 1.07 | -- | -- | -- | 0.542 | 3.22 | -- | -- | -- | -- |
| 621.61 | 1.16 | 6.19 | -- | -- | -3.05 | -- | -- | -0.0239 | -- | 26.8 | 1109 | -- | -- |
| 785.2 | 1.31 | 6.06 | -- | -- | -- | -- | -- | 0.565 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 15 | 228.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 81 | 229.87 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 95 | 230.15 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 182 | 231.47 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 199 | 231.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 203 | 231.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 209 | 231.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 216 | 231.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 290 | 232.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 319 | 233.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 321 | 233.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 329 | 233.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 466 | 234.60 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 491 | 234.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 517 | 235.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 557 | 235.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 12 |
| 577 | 235.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |