BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0339500 Os01g0339500|AK066107
(460 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0339500 Conserved hypothetical protein 473 e-133
Os10g0395700 353 1e-97
Os10g0401900 Conserved hypothetical protein 189 3e-48
Os10g0402100 No apical meristem (NAM) protein domain contai... 170 2e-42
Os10g0396000 75 9e-14
>Os01g0339500 Conserved hypothetical protein
Length = 460
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/460 (56%), Positives = 262/460 (56%)
Query: 1 MATTMGSGRGRRRWCPSTARTGTACLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MATTMGSGRGRRRWCPSTARTGTACL
Sbjct: 1 MATTMGSGRGRRRWCPSTARTGTACLSAATSSPRTWSSSPSSGASSSAASSPAPSTTSSS 60
Query: 61 XXXXXXXXXXXXMLEDLAVYRLYKIKRKEDEEPVNAAAAASSTDEXXXXXXXXXXXXXXX 120
MLEDLAVYRLYKIKRKEDEEPVNAAAAASSTDE
Sbjct: 61 ISGSSNSTLPSSMLEDLAVYRLYKIKRKEDEEPVNAAAAASSTDEPSTSSALSPPTPPRP 120
Query: 121 XXDMAGPSSATPLLPLQLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
DMAGPSSATPLLPLQLPD
Sbjct: 121 LPDMAGPSSATPLLPLQLPDMTGPSSSTPLLPLQLLGLAGSSSAMSLPLPLQLPGLAGSS 180
Query: 181 XXMSLPAQQMPGMXXXXXXXXXXXXXXXXXXXXXXXXDQANMASTSQASTPSSELLQDWY 240
MSLPAQQMPGM DQANMASTSQASTPSSELLQDWY
Sbjct: 181 SAMSLPAQQMPGMAGSSSAMPLPLSLPGLAGGMMSMADQANMASTSQASTPSSELLQDWY 240
Query: 241 DEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPNGEPVQHDGYLGMAANPTSYMLEHPL 300
DEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPNGEPVQHDGYLGMAANPTSYMLEHPL
Sbjct: 241 DEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPNGEPVQHDGYLGMAANPTSYMLEHPL 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXVDNHHRLSPPHDAAGSNYNHPELAGYNGGVXXXXXXXX 360
VDNHHRLSPPHDAAGSNYNHPELAGYNGGV
Sbjct: 301 PTAAIPPEPMTPPTSSPAPPPAVDNHHRLSPPHDAAGSNYNHPELAGYNGGVQAQHEHQH 360
Query: 361 XXXXXXXXLLVXXXXXXXXXXXXXXXTQLGVAELDTERIAEMVNHIMDGEFEFKFEDNTV 420
LLV TQLGVAELDTERIAEMVNHIMDGEFEFKFEDNTV
Sbjct: 361 QPQEPQPALLVDGEDGYGAIADGDGDTQLGVAELDTERIAEMVNHIMDGEFEFKFEDNTV 420
Query: 421 LKYNEVFPDDDKVVAAPMMIXXXXXXXXXXXXXXXXPFDN 460
LKYNEVFPDDDKVVAAPMMI PFDN
Sbjct: 421 LKYNEVFPDDDKVVAAPMMIDGGGDGDGADGGDGGDPFDN 460
>Os10g0395700
Length = 532
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 208/388 (53%), Positives = 215/388 (55%), Gaps = 38/388 (9%)
Query: 74 LEDLAVYRLYKIKRKEDEEPVNAAAAASSTDEXXXXXXXXXXXXXXXXXDMAGPSSATPL 133
LEDLAVYRLYKIKRKEDEEP N AAAASSTDE DMAGPSSAT
Sbjct: 182 LEDLAVYRLYKIKRKEDEEPSNTAAAASSTDEPSTSSALPPPTPPRPLPDMAGPSSAT-- 239
Query: 134 LPLQLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSLPAQQMPGM 193
MSLPA Q+PGM
Sbjct: 240 ---------------------------------PLLPLQLPGLAGSSSAMSLPALQLPGM 266
Query: 194 XXXXXXXXXXXXXXXXXXX-XXXXXDQANMASTSQASTPSSELLQDWYDEFEITYGAVAP 252
DQANMASTSQASTPSSELLQDWYDEFEITYGAVAP
Sbjct: 267 AGSSSAMPLPPLSLPGLAGGMMSMADQANMASTSQASTPSSELLQDWYDEFEITYGAVAP 326
Query: 253 PSPSTISWEEPQSSPTGWWPSPNGEPVQHDGYLGMAANPTSYMLEHPLXXXXXXXXXXXX 312
PSPSTISW PQSSPTGWWPSPNG PVQHDGYLGMAA+PTSYMLE+ L
Sbjct: 327 PSPSTISWVAPQSSPTGWWPSPNGGPVQHDGYLGMAADPTSYMLENLLPTAAIPPEPMMP 386
Query: 313 XXXXXXXXXXVDNHHRLSPPHDAAGSNYNHPELAGYNGGVXXXXXXXXXXXXXXXXLLVX 372
VD+HHRLSPPHDAAGSNYNHPELA YNGGV L+
Sbjct: 387 PTSSPAPPPAVDHHHRLSPPHDAAGSNYNHPELADYNGGVQAQHEHQYHPQEPQASLV-- 444
Query: 373 XXXXXXXXXXXXXXTQLGVAELDTERIAEMVNHIMDGEFEFKFEDNTVLKYNEVFPDDDK 432
QLG AELDTERIAEMVNHIMDGEFEFKFEDNTVLKYNEVFPD+D+
Sbjct: 445 DAEDGYSAMAGGDDAQLGGAELDTERIAEMVNHIMDGEFEFKFEDNTVLKYNEVFPDNDE 504
Query: 433 VVAAPMMIXXXXXXXXXXXXXXXXPFDN 460
VVAAPMMI PFDN
Sbjct: 505 VVAAPMMIDGGRDGDGADGGDGDDPFDN 532
>Os10g0401900 Conserved hypothetical protein
Length = 183
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/192 (57%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 218 DQANMASTSQASTPSSELLQDWYDEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPNGE 277
DQANMASTSQASTPSSELLQDWYDEFEITYGAV PPSPSTISWE PQSSP GWWPSPNG
Sbjct: 3 DQANMASTSQASTPSSELLQDWYDEFEITYGAVTPPSPSTISWEAPQSSPMGWWPSPNGG 62
Query: 278 PVQHDGYLGMAANPTSYMLEHPLXXXXXXXXXXXXXXXXXXXXXXVDNHHRLSPPHDAAG 337
VQHDGYL MAA+PT YMLEH L VD+HHRLSPPHDA
Sbjct: 63 LVQHDGYLRMAADPTWYMLEHLLPTAAIPPEPMTPKKSSPAPPPAVDHHHRLSPPHDA-- 120
Query: 338 SNYNHPELAGYNGGVXXXXXXXXXXXXXXXXLLVXXXXXXXXXXXXXXXTQLGVAELDTE 397
AGYNGG+ LLV TQLG E DTE
Sbjct: 121 --------AGYNGGIQAQHENQHHPQEPQPALLV-DGEDGYGAMADSNDTQLGGTEFDTE 171
Query: 398 RIAEMVNHIMDG 409
RIAEMV + G
Sbjct: 172 RIAEMVKVQIRG 183
>Os10g0402100 No apical meristem (NAM) protein domain containing protein
Length = 535
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 117/223 (52%), Gaps = 31/223 (13%)
Query: 218 DQANMASTSQASTPSSELLQDWYDEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPNGE 277
DQANMASTSQAS PSSEL QDWYDE+E+ YGA APPSPSTIS SSPT WWPS G
Sbjct: 298 DQANMASTSQASAPSSELPQDWYDEYEVAYGAAAPPSPSTISCAALPSSPTAWWPSSIGG 357
Query: 278 PVQHDGYLGMAANPTSYMLEHPLXXXXXXXXXXXXXXXXXXXXXXVDNHHRLSPPHDAAG 337
PVQHDGYLGMA + LEH L AG
Sbjct: 358 PVQHDGYLGMADPASCNTLEHLLPSAAIPPEPMAPPKNSPAAPPPA-----------DAG 406
Query: 338 SNYNHPELAGYNGGVXXXXXXXXXXXXXXXXLLVXXXXXXXXXXXXXXXTQLGVAELDTE 397
NY+HPELA Y GGV +LG AE D+E
Sbjct: 407 GNYDHPELADYGGGVQAQHEH-------------HQPQELTDGADGDAQLELGAAEFDSE 453
Query: 398 RIAEMVNHIMDGEFEFKFEDNTVLKYNEVFPDDDKVVAAPMMI 440
R+AEM++ IMDGEF FKFED+T++ +NE V AAPM+I
Sbjct: 454 RVAEMISQIMDGEFVFKFEDDTIVSFNE-------VAAAPMLI 489
>Os10g0396000
Length = 259
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 74 LEDLAVYRLYKIKRKEDEEPVNAAAAASSTDE-XXXXXXXXXXXXXXXXXDMAGPSSATP 132
LEDLAVYR+YKI+RKED EPVNAAAA SSTDE DMAG SSAT
Sbjct: 40 LEDLAVYRVYKIRRKEDTEPVNAAAAVSSTDEPSTPAALPLPTPPPRPLPDMAGSSSATS 99
Query: 133 LLPLQLP 139
LLPLQ P
Sbjct: 100 LLPLQFP 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,271,059
Number of extensions: 321583
Number of successful extensions: 1082
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 7
Length of query: 460
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 356
Effective length of database: 11,605,545
Effective search space: 4131574020
Effective search space used: 4131574020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)