BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0363300 Os10g0363300|AK058817
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0363300 Similar to Acetyl-CoA carboxylase (EC 6.4.1.2)... 469 e-133
Os05g0295300 Similar to Acetyl-coenzyme A carboxylase (EC 6... 176 1e-44
>Os10g0363300 Similar to Acetyl-CoA carboxylase (EC 6.4.1.2) (Fragment)
Length = 244
Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust.
Identities = 232/244 (95%), Positives = 232/244 (95%)
Query: 1 SKINPEHIEMYAERTAKGNVLEPEGLVEIKFRPKELEECMLRLDPELIKLSTRLREMKKE 60
SKINPEHIEMYAERTAKGNVLEPEGLVEIKFRPKELEECMLRLDPELIKLSTRLREMKKE
Sbjct: 1 SKINPEHIEMYAERTAKGNVLEPEGLVEIKFRPKELEECMLRLDPELIKLSTRLREMKKE 60
Query: 61 NAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEEXXXX 120
NAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEE
Sbjct: 61 NAGLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEESRSF 120
Query: 121 XXXXXXXXVTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFA 180
VTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFA
Sbjct: 121 FYRRLRRRVTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFA 180
Query: 181 WKDDPTNYENQLEELKAERVSKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLR 240
WKDDPTNYENQLEELKAERVSKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLR
Sbjct: 181 WKDDPTNYENQLEELKAERVSKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLR 240
Query: 241 QLLG 244
QLLG
Sbjct: 241 QLLG 244
>Os05g0295300 Similar to Acetyl-coenzyme A carboxylase (EC 6.4.1.2)
Length = 185
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 129/183 (70%), Gaps = 6/183 (3%)
Query: 63 GLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEEXXXXXX 122
G ++ + + +I AR KQLMP+YTQ+A RFAELHDTS RMAAKGVI KVVDWEE
Sbjct: 8 GSADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWEESRSFFY 67
Query: 123 XXXXXXVTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFAWK 182
++ED LAKEIR AGEQ S + A++ IKKWY +S+ ++ W++D+AF AW
Sbjct: 68 KRLRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAE-----WDDDDAFVAWM 122
Query: 183 DDPTNYENQLEELKAERV-SKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLRQ 241
D+P NY++ ++ LKA+RV S S D++ALP GLS++L+KM+PS+R Q+++ +R+
Sbjct: 123 DNPENYKDYIQYLKAQRVSQSLSSLSDSSSDLQALPQGLSMLLDKMDPSRRAQLVEEIRK 182
Query: 242 LLG 244
+LG
Sbjct: 183 VLG 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,360,340
Number of extensions: 267820
Number of successful extensions: 690
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)