Os05g0295300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Acetyl-coenzyme A carboxylase (EC 6.4.1.2).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0295300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Acetyl-coenzyme A carboxylase (EC 6.4.1.2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.98 | 0.364 | 11.6 | 0.177 | 0.305 | -0.195 | 0.0361 | -4.95 | -0.14 | 20.7 | 29.83 | 3686 | -- | -- |
| 62.05 | 0.367 | 11.7 | -0.593 | 0.279 | -0.795 | 0.129 | -- | -0.136 | 20.1 | 30.4 | 3741 | -- | -- |
| 59.98 | 0.361 | 11.6 | 0.186 | 0.306 | -0.189 | -- | -5.04 | -0.14 | 20.8 | 29.87 | 3626 | -- | -- |
| 61.85 | 0.366 | 11.7 | -0.633 | 0.29 | -0.772 | -- | -- | -0.146 | 20.8 | 30.4 | 3742 | -- | -- |
| 65.12 | 0.376 | 11.6 | 0.0929 | -- | -0.339 | -- | -4.16 | -0.146 | -- | 29.64 | 3708 | -- | -- |
| 80.34 | 0.42 | 11.7 | -0.465 | 0.336 | -- | 0.0491 | -- | -0.291 | 21.4 | -- | -- | -- | -- |
| 80.35 | 0.42 | 11.7 | -0.467 | 0.335 | -- | -- | -- | -0.291 | 21.5 | -- | -- | -- | -- |
| 66.63 | 0.38 | 11.6 | -0.623 | -- | -0.753 | -- | -- | -0.164 | -- | 29.9 | 3808 | -- | -- |
| 72.46 | 0.396 | 11.7 | -- | 0.308 | -0.644 | -- | -- | -0.114 | 20.8 | 30.3 | 3744 | -- | -- |
| 86.94 | 0.436 | 11.7 | -0.464 | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
| 86.09 | 0.434 | 11.7 | -- | 0.335 | -- | -- | -- | -0.239 | 21.3 | -- | -- | -- | -- |
| 77.64 | 0.41 | 11.7 | -- | -- | -0.678 | -- | -- | -0.162 | -- | 29.9 | 3718 | -- | -- |
| 92.63 | 0.449 | 11.7 | -- | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 4 | 58.70 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 6 | 58.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 7 | 58.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 9 | 59.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 12 | 59.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 14 | 59.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 15 | 59.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 18 | 59.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 20 | 59.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 22 | 59.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 38 | 59.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 40 | 59.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 44 | 59.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 67 | 59.44 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 70 | 59.47 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 89 | 59.54 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 91 | 59.55 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 105 | 59.62 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 125 | 59.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 150 | 59.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 159 | 59.75 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 163 | 59.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 296 | 60.06 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 499 | 60.43 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 535 | 60.48 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 615 | 60.66 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 640 | 60.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 642 | 60.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 644 | 60.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 648 | 60.69 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 656 | 60.71 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 690 | 60.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 691 | 60.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 699 | 60.71 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 701 | 60.72 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 727 | 60.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 19 |
| 768 | 60.74 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 817 | 60.78 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 823 | 60.79 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 965 | 60.86 | temperature | 30 | 720 | < th | dose independent | sin | 6 | NA |