BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0295300 Os05g0295300|AK059261
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G36160.1  | chr1:13534196-13543773 FORWARD LENGTH=2255         172   1e-43
AT1G36180.1  | chr1:13546047-13558339 FORWARD LENGTH=2356         171   2e-43

>AT1G36160.1 | chr1:13534196-13543773 FORWARD LENGTH=2255
          Length = 2254

 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 120/181 (66%), Gaps = 6/181 (3%)

Query: 10   ADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWEESRSFFYKR 69
            A+ + LQ+ I+AR KQL+P+Y QIA +FAELHDTS+RMAAKGVIK VV+W  SRSFFYK+
Sbjct: 2075 ANIELLQQQIKAREKQLLPVYIQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKK 2134

Query: 70   LRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAE-----WDDDDAFVAWMDN 124
            L RRI+E  L K +R  +G+  +++ ++ LI+ W+  S  A+     W DD  F  W DN
Sbjct: 2135 LNRRIAESSLVKNVREASGDNLAYKSSMRLIQDWFCNSDIAKGKEEAWTDDQVFFTWKDN 2194

Query: 125  PENYKDYIQYLKAQRVXXXXXXXXXXXXXXXALPQGLSMLLDKMDPSRRAQLVEEIRKVL 184
              NY+  +  L+AQ++               ALPQGL+ LL+K++PS+R +LV  IRKVL
Sbjct: 2195 VSNYELKLSELRAQKL-LNQLAEIGNSSDLQALPQGLANLLNKVEPSKREELVAAIRKVL 2253

Query: 185  G 185
            G
Sbjct: 2254 G 2254



>AT1G36180.1 | chr1:13546047-13558339 FORWARD LENGTH=2356
          Length = 2355

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 119/181 (65%), Gaps = 6/181 (3%)

Query: 10   ADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWEESRSFFYKR 69
            A+ + LQ+ I+ R KQL+P+YTQIA +FAELHDTS+RMAAKGVIK VV+W  SRSFFYK+
Sbjct: 2176 ANIELLQKQIKTREKQLLPVYTQIATKFAELHDTSMRMAAKGVIKSVVEWSGSRSFFYKK 2235

Query: 70   LRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAE-----WDDDDAFVAWMDN 124
            L RRI+E  L + IR  +G+  S++ A+ LI+ W+  S  A+     W DD  F  W DN
Sbjct: 2236 LYRRIAESSLVRNIRKASGDILSYKSAMGLIQDWFRKSEIAKGKEEAWTDDQLFFTWKDN 2295

Query: 125  PENYKDYIQYLKAQRVXXXXXXXXXXXXXXXALPQGLSMLLDKMDPSRRAQLVEEIRKVL 184
              NY+  +  L+ Q++               ALPQGL+ LL+K+D SRR +LV+ IRKVL
Sbjct: 2296 VSNYEQKLSELRTQKL-LNQLAEIGNSSDLQALPQGLANLLNKVDLSRREELVDAIRKVL 2354

Query: 185  G 185
            G
Sbjct: 2355 G 2355



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,436,871
Number of extensions: 116717
Number of successful extensions: 308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)