BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0295300 Os05g0295300|AK059261
(185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0295300 Similar to Acetyl-coenzyme A carboxylase (EC 6... 343 5e-95
Os10g0363300 Similar to Acetyl-CoA carboxylase (EC 6.4.1.2)... 205 2e-53
>Os05g0295300 Similar to Acetyl-coenzyme A carboxylase (EC 6.4.1.2)
Length = 185
Score = 343 bits (879), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 170/185 (91%), Positives = 170/185 (91%)
Query: 1 LEVANKNGSADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWE 60
LEVANKNGSADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWE
Sbjct: 1 LEVANKNGSADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWE 60
Query: 61 ESRSFFYKRLRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAEWDDDDAFVA 120
ESRSFFYKRLRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAEWDDDDAFVA
Sbjct: 61 ESRSFFYKRLRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAEWDDDDAFVA 120
Query: 121 WMDNPENYKDYIQYLKAQRVXXXXXXXXXXXXXXXALPQGLSMLLDKMDPSRRAQLVEEI 180
WMDNPENYKDYIQYLKAQRV ALPQGLSMLLDKMDPSRRAQLVEEI
Sbjct: 121 WMDNPENYKDYIQYLKAQRVSQSLSSLSDSSSDLQALPQGLSMLLDKMDPSRRAQLVEEI 180
Query: 181 RKVLG 185
RKVLG
Sbjct: 181 RKVLG 185
>Os10g0363300 Similar to Acetyl-CoA carboxylase (EC 6.4.1.2) (Fragment)
Length = 244
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/183 (54%), Positives = 136/183 (74%), Gaps = 6/183 (3%)
Query: 8 GSADTKSLQENIEARTKQLMPLYTQIAIRFAELHDTSLRMAAKGVIKKVVDWEESRSFFY 67
G ++ + + +I AR KQLMP+YTQ+A RFAELHDTS RMAAKGVI KVVDWEESRSFFY
Sbjct: 63 GLSEMDTTRRSIIARMKQLMPIYTQVATRFAELHDTSARMAAKGVIGKVVDWEESRSFFY 122
Query: 68 KRLRRRISEDVLAKEIRAVAGEQFSHQPAIELIKKWYSASHAAE-----WDDDDAFVAWM 122
+RLRRR++ED LAKEIR AGEQ S + A++ IKKWY +S+ ++ W++D+AF AW
Sbjct: 123 RRLRRRVTEDALAKEIREAAGEQLSQKSALDYIKKWYLSSNGSDGNSEKWNNDEAFFAWK 182
Query: 123 DNPENYKDYIQYLKAQRVXXXXXXXXXXXXXXXALPQGLSMLLDKMDPSRRAQLVEEIRK 182
D+P NY++ ++ LKA+RV ALP GLS++L+KM+PS+R Q+++ +R+
Sbjct: 183 DDPTNYENQLEELKAERV-SKWLSRLAESPDVKALPNGLSIVLNKMNPSKREQVIDGLRQ 241
Query: 183 VLG 185
+LG
Sbjct: 242 LLG 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,288,335
Number of extensions: 179973
Number of successful extensions: 513
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)