BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0358600 Os10g0358600|AK068930
         (302 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0358600  Conserved hypothetical protein                      587   e-168
Os04g0166600  Conserved hypothetical protein                      231   7e-61
Os02g0823200  Conserved hypothetical protein                      171   7e-43

>Os10g0358600 Conserved hypothetical protein
          Length = 302

 Score =  587 bits (1513), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/302 (95%), Positives = 288/302 (95%)

Query: 1   SRFGFLRYGEDGRIEGELERILGPQCLISDSWEVHSPDWCDPGVNFGEFLGSRIWPTVPA 60
           SRFGFLRYGEDGRIEGELERILGPQCLISDSWEVHSPDWCDPGVNFGEFLGSRIWPTVPA
Sbjct: 1   SRFGFLRYGEDGRIEGELERILGPQCLISDSWEVHSPDWCDPGVNFGEFLGSRIWPTVPA 60

Query: 61  RNRGNWGPIWCQLGSNLEVEAIDPAGEMIAAVGRGPEGWGEDEMSVLPRHTKVVVTGNNR 120
           RNRGNWGPIWCQLGSNLEVEAIDPAGEMIAAVGRGPEGWGEDEMSVLPRHTKVVVTGNNR
Sbjct: 61  RNRGNWGPIWCQLGSNLEVEAIDPAGEMIAAVGRGPEGWGEDEMSVLPRHTKVVVTGNNR 120

Query: 121 TKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGNEDDDKFDCENMQ 180
           TKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGNEDDDKFDCENMQ
Sbjct: 121 TKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGNEDDDKFDCENMQ 180

Query: 181 WNSSDLASDDAQSPKPQRSRSRQHRGFQTKSFSRSMXXXXXXXXXXXXXXRAHTKVDLSK 240
           WNSSDLASDDAQSPKPQRSRSRQHRGFQTKSFSRSM              RAHTKVDLSK
Sbjct: 181 WNSSDLASDDAQSPKPQRSRSRQHRGFQTKSFSRSMSCDSHSKASFSSSSRAHTKVDLSK 240

Query: 241 LEMTALWRYWRHFNLDASPNPSREQLVDAVQRHFVSQQLDELQVIVGFVQAAKRLKTNVK 300
           LEMTALWRYWRHFNLDASPNPSREQLVDAVQRHFVSQQLDELQVIVGFVQAAKRLKTNVK
Sbjct: 241 LEMTALWRYWRHFNLDASPNPSREQLVDAVQRHFVSQQLDELQVIVGFVQAAKRLKTNVK 300

Query: 301 VA 302
           VA
Sbjct: 301 VA 302



>Os04g0166600 Conserved hypothetical protein
          Length = 221

 Score =  231 bits (588), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 143/199 (71%), Gaps = 3/199 (1%)

Query: 100 GEDEMSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNAL 159
           G++E+SVLPRHTKV+VTGNNRTKSVLVGL GVVKKAVGLGGWHWLVL NG+EVKLQRNAL
Sbjct: 21  GDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNAL 80

Query: 160 SVIEPPTGNEDDDKFDCENMQWNSSDLASDDAQSPKPQRSRSRQHRGFQTKSFSRSMXXX 219
           SV+EPPTGNEDDD  D  N   +SSD+   D      +  +  + R   T+ +S  +   
Sbjct: 81  SVLEPPTGNEDDDDIDGNNSFCSSSDMGDKDMDYSSIEYHKPTKPRVRHTRPWSSCIKSS 140

Query: 220 XXXXXXXXXXXRAHTKVDLSKLEMTALWRYWRHFNL-DASPNPSREQLVDAVQRHFVSQQ 278
                      R  T+V+L+KL    LWRYW+HFNL   +PNPS+EQL   VQ+HF SQQ
Sbjct: 141 NRGNFHPSTKLR--TRVNLTKLGTPTLWRYWKHFNLVSMNPNPSKEQLFHGVQQHFQSQQ 198

Query: 279 LDELQVIVGFVQAAKRLKT 297
           LDELQVI+GF+QAAKRLKT
Sbjct: 199 LDELQVILGFIQAAKRLKT 217



>Os02g0823200 Conserved hypothetical protein
          Length = 208

 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 112/165 (67%), Gaps = 16/165 (9%)

Query: 100 GEDEMSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNAL 159
           G++E+SVLPRHTKV+VTGNNRTKSVLVGL GVVKKAVGLGGWHWLVL NG+EVKLQRNAL
Sbjct: 21  GDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNAL 80

Query: 160 SVIEPPTGNEDDDKFDCENMQWNSSDLASDDA-----QSPKPQRSRSRQHRGFQ--TKSF 212
           SV+EPPTGNEDDD  D  N   +SSD+   D      +  KP + R R  R +   TKS 
Sbjct: 81  SVLEPPTGNEDDDDIDGNNSFCSSSDMGDKDMDYSIIEYHKPTKPRVRHTRPWSSCTKSS 140

Query: 213 SRSMXXXXXXXXXXXXXXRAHTKVDLSKLEMTALWRYWRHFNLDA 257
           +R                   T+V+L++L    LWRYW+HFNL+A
Sbjct: 141 NRGNFHPSSI---------LQTRVNLTRLGTPTLWRYWKHFNLEA 176



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,019,922
Number of extensions: 477621
Number of successful extensions: 1218
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)