Os04g0166600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0166600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.49 | 0.739 | 3.37 | 0.42 | 0.682 | -0.42 | -0.397 | 10.7 | -0.408 | 4.88 | 30.9 | 1154 | -- | -- |
| 251.95 | 0.739 | 3.56 | -1.31 | 0.71 | 0.772 | -0.63 | -- | -0.419 | 5.05 | 30.7 | 1167 | -- | -- |
| 247.73 | 0.733 | 3.37 | 0.421 | 0.682 | -0.447 | -- | 10.9 | -0.408 | 4.97 | 31.28 | 1131 | -- | -- |
| 251.58 | 0.739 | 3.57 | -1.3 | 0.692 | 0.793 | -- | -- | -0.445 | 5.03 | 29 | 1216 | -- | -- |
| 271.81 | 0.768 | 3.35 | 0.622 | -- | -0.503 | -- | 12.1 | -0.377 | -- | 31.42 | 1159 | -- | -- |
| 280.85 | 0.786 | 3.6 | -1.1 | 0.771 | -- | -0.21 | -- | -0.553 | 4.47 | -- | -- | -- | -- |
| 280.97 | 0.785 | 3.6 | -1.09 | 0.769 | -- | -- | -- | -0.552 | 4.49 | -- | -- | -- | -- |
| 276.37 | 0.774 | 3.59 | -1.31 | -- | 0.875 | -- | -- | -0.45 | -- | 28.36 | 1247 | -- | -- |
| 294.19 | 0.799 | 3.53 | -- | 0.7 | 0.611 | -- | -- | -0.283 | 5.02 | 31.2 | 1151 | -- | -- |
| 312.63 | 0.826 | 3.61 | -1.06 | -- | -- | -- | -- | -0.531 | -- | -- | -- | -- | -- |
| 312.52 | 0.827 | 3.57 | -- | 0.749 | -- | -- | -- | -0.43 | 4.52 | -- | -- | -- | -- |
| 318.98 | 0.832 | 3.55 | -- | -- | 0.68 | -- | -- | -0.271 | -- | 31.2 | 1171 | -- | -- |
| 342.49 | 0.864 | 3.58 | -- | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.14 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 3 | 248.38 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 12 | 248.95 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 21 | 249.39 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 9 |
| 24 | 249.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 25 | 249.70 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 16 |
| 28 | 249.97 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 44 | 250.20 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 67 | 250.77 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 80 | 250.82 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 83 | 250.92 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 93 | 251.38 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 106 | 251.44 | wind | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 124 | 251.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 157 | 251.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 246 | 252.14 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 247 | 252.14 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 336 | 252.48 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 375 | 252.59 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 521 | 252.90 | humidity | 70.0 | 720 | > th | dose independent | sin | 11 | NA |
| 539 | 252.96 | temperature | 30.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 552 | 252.98 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 562 | 253.03 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 583 | 253.15 | temperature | 30.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 657 | 253.73 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 658 | 253.74 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 709 | 253.86 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 711 | 253.86 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 7 |
| 733 | 253.92 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 755 | 254.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 757 | 254.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 762 | 254.04 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 769 | 254.08 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 784 | 254.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 802 | 254.24 | humidity | 70.0 | 720 | < th | dose independent | sin | 11 | NA |
| 891 | 254.65 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 913 | 254.70 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 961 | 254.84 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 981 | 254.87 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 983 | 254.89 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 8 |