BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0166600 Os04g0166600|AK102406
         (221 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0166600  Conserved hypothetical protein                      445   e-125
Os02g0823200  Conserved hypothetical protein                      331   3e-91
Os10g0358600  Conserved hypothetical protein                      220   6e-58

>Os04g0166600 Conserved hypothetical protein
          Length = 221

 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/221 (97%), Positives = 215/221 (97%)

Query: 1   MMMETELCSSRVLSPPRYESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLG 60
           MMMETELCSSRVLSPPRYESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLG
Sbjct: 1   MMMETELCSSRVLSPPRYESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLG 60

Query: 61  GWHWLVLKNGVEVKLQRNALSVLEPPTGNEXXXXXXGNNSFCSSSDMGDKDMDYSSIEYH 120
           GWHWLVLKNGVEVKLQRNALSVLEPPTGNE      GNNSFCSSSDMGDKDMDYSSIEYH
Sbjct: 61  GWHWLVLKNGVEVKLQRNALSVLEPPTGNEDDDDIDGNNSFCSSSDMGDKDMDYSSIEYH 120

Query: 121 KPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNLTKLGTPTLWRYWKHFNLVSMNPN 180
           KPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNLTKLGTPTLWRYWKHFNLVSMNPN
Sbjct: 121 KPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNLTKLGTPTLWRYWKHFNLVSMNPN 180

Query: 181 PSKEQLFHGVQQHFQSQQLDELQVILGFIQAAKRLKTLYRS 221
           PSKEQLFHGVQQHFQSQQLDELQVILGFIQAAKRLKTLYRS
Sbjct: 181 PSKEQLFHGVQQHFQSQQLDELQVILGFIQAAKRLKTLYRS 221



>Os02g0823200 Conserved hypothetical protein
          Length = 208

 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/174 (91%), Positives = 164/174 (94%)

Query: 1   MMMETELCSSRVLSPPRYESGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLG 60
           MMMETELCSSRVLS PRY+SGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLG
Sbjct: 1   MMMETELCSSRVLSLPRYDSGDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLG 60

Query: 61  GWHWLVLKNGVEVKLQRNALSVLEPPTGNEXXXXXXGNNSFCSSSDMGDKDMDYSSIEYH 120
           GWHWLVLKNGVEVKLQRNALSVLEPPTGNE      GNNSFCSSSDMGDKDMDYS IEYH
Sbjct: 61  GWHWLVLKNGVEVKLQRNALSVLEPPTGNEDDDDIDGNNSFCSSSDMGDKDMDYSIIEYH 120

Query: 121 KPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNLTKLGTPTLWRYWKHFNL 174
           KPTKPRVRHTRPWSSC KSSNRGNFHPS+ L+TRVNLT+LGTPTLWRYWKHFNL
Sbjct: 121 KPTKPRVRHTRPWSSCTKSSNRGNFHPSSILQTRVNLTRLGTPTLWRYWKHFNL 174



>Os10g0358600 Conserved hypothetical protein
          Length = 302

 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 142/199 (71%), Gaps = 3/199 (1%)

Query: 21  GDEELSVLPRHTKVIVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNAL 80
           G++E+SVLPRHTKV+VTGNNRTKSVLVGL GVVKKAVGLGGWHWLVL NG+EVKLQRNAL
Sbjct: 100 GEDEMSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNAL 159

Query: 81  SVLEPPTGNEXXXXXXGNNSFCSSSDMGDKDMDYSSIEYHKPTKPRVRHTRPWSSCIKSS 140
           SV+EPPTGNE        N   +SSD+   D      +  +  + R   T+ +S  +   
Sbjct: 160 SVIEPPTGNEDDDKFDCENMQWNSSDLASDDAQSPKPQRSRSRQHRGFQTKSFSRSMSCD 219

Query: 141 NRGNFHPSTKLR--TRVNLTKLGTPTLWRYWKHFNLVSMNPNPSKEQLFHGVQQHFQSQQ 198
           +      S+  R  T+V+L+KL    LWRYW+HFNL   +PNPS+EQL   VQ+HF SQQ
Sbjct: 220 SHSKASFSSSSRAHTKVDLSKLEMTALWRYWRHFNL-DASPNPSREQLVDAVQRHFVSQQ 278

Query: 199 LDELQVILGFIQAAKRLKT 217
           LDELQVI+GF+QAAKRLKT
Sbjct: 279 LDELQVIVGFVQAAKRLKT 297



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,018,907
Number of extensions: 322285
Number of successful extensions: 657
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 124
Effective length of database: 11,971,043
Effective search space: 1484409332
Effective search space used: 1484409332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)