BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0350400 Os10g0350400|Os10g0350400
(507 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0350400 Similar to 40S ribosomal protein S23-2 (S12) 871 0.0
Os03g0818400 Similar to 40S ribosomal protein S23 (S12) 189 6e-48
Os01g0834500 Similar to 40S ribosomal protein S23 (S12) 189 6e-48
Os07g0434300 158 1e-38
Os02g0724400 97 3e-20
Os07g0434125 92 7e-19
Os01g0393300 77 4e-14
Os06g0250760 72 9e-13
Os01g0210200 71 2e-12
Os06g0258200 68 2e-11
Os06g0258300 67 2e-11
Os03g0309600 65 9e-11
>Os10g0350400 Similar to 40S ribosomal protein S23-2 (S12)
Length = 507
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/507 (85%), Positives = 436/507 (85%)
Query: 1 MRVGKAKRRLDLSTRRGTDEGGRTNCWKTATSAPSLARATAVRVLATDPDPSGVACVRCD 60
MRVGKAKRRLDLSTRRGTDEGGRTNCWKTATSAPSLARATAVRVLATDPDPSGVACVRCD
Sbjct: 1 MRVGKAKRRLDLSTRRGTDEGGRTNCWKTATSAPSLARATAVRVLATDPDPSGVACVRCD 60
Query: 61 VNGERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKKPFAGSSHAKGI 120
VNGERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKKPFAGSSHAKGI
Sbjct: 61 VNGERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKKPFAGSSHAKGI 120
Query: 121 VLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGIYGIKV 180
VLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGIYGIKV
Sbjct: 121 VLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGIYGIKV 180
Query: 181 LVDAXXXXXXXXXXXXXXXHGDXXXXXXXXXXXXXXXXXXDVYHRPFTARDDDELLRLHY 240
LVDA HGD DVYHRPFTARDDDELLRLHY
Sbjct: 181 LVDALSSSRLRGRDGSGGDHGDATAAAAASREVAPPPRPRDVYHRPFTARDDDELLRLHY 240
Query: 241 RLGDRWKEIGRAVYGRTSRVMKHRWXXXXXXXXXXXXXXXXXXXXXXXDDMVETSEVEEP 300
RLGDRWKEIGRAVYGRTSRVMKHRW DDMVETSEVEEP
Sbjct: 241 RLGDRWKEIGRAVYGRTSRVMKHRWRELRRGGFLAAAARKELAALDMADDMVETSEVEEP 300
Query: 301 ADQSLPSLELQRSTLADTLASSFGSCSLATDHVMDPLAGSLALGWCHHLARDVYHRPFTA 360
ADQSLPSLELQRSTLADTLASSFGSCSLATDHVMDPLAGSLALGWCHHLARDVYHRPFTA
Sbjct: 301 ADQSLPSLELQRSTLADTLASSFGSCSLATDHVMDPLAGSLALGWCHHLARDVYHRPFTA 360
Query: 361 RDDDELLRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRSGFLAAAARTEQKLXXXXX 420
RDDDELLRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRSGFLAAAARTEQKL
Sbjct: 361 RDDDELLRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRSGFLAAAARTEQKLDMADD 420
Query: 421 XXXXXXXXXXQSLPTTRKSIIATGRKGSLQAGQPSACKPTTVKIADLRRRGGRPPAKIIF 480
QSLPTTRKSIIATGRKGSLQAGQPSACKPTTVKIADLRRRGGRPPAKIIF
Sbjct: 421 MVESEVEESDQSLPTTRKSIIATGRKGSLQAGQPSACKPTTVKIADLRRRGGRPPAKIIF 480
Query: 481 AGGRWLVRSACEKKNRPPTKKNFRLRR 507
AGGRWLVRSACEKKNRPPTKKNFRLRR
Sbjct: 481 AGGRWLVRSACEKKNRPPTKKNFRLRR 507
>Os03g0818400 Similar to 40S ribosomal protein S23 (S12)
Length = 142
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/103 (88%), Positives = 94/103 (91%)
Query: 73 AKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 132
KT GMGAGRKLKTHRRNQRWADKAYKKSH GNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61
Query: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGI 175
NSAI KCARVQLVKNGKKIAAFVPNDGCLNFI+EN+ + G
Sbjct: 62 NSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
>Os01g0834500 Similar to 40S ribosomal protein S23 (S12)
Length = 142
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 91/103 (88%), Positives = 94/103 (91%)
Query: 73 AKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 132
KT GMGAGRKLKTHRRNQRWADKAYKKSH GNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61
Query: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGI 175
NSAI KCARVQLVKNGKKIAAFVPNDGCLNFI+EN+ + G
Sbjct: 62 NSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
>Os07g0434300
Length = 198
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/125 (69%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 221 DVYHRPFTARDDDELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRWXXXXXXXXXXXXXXX 280
DVYHRPFTARDDDELLRLHYRLGDRWKEIGRAVYGRTSR+MKHRW
Sbjct: 76 DVYHRPFTARDDDELLRLHYRLGDRWKEIGRAVYGRTSRIMKHRWRELRRSGFPLAATAR 135
Query: 281 XXXXXXXXDDMVETSEVEEPADQSLPSLELQRSTLADTLASSFGSCSLATDHVMDPLAGS 340
DMVE SEVEE +DQSLP ELQRS LAD LASSFG CSLA +H MDPLAGS
Sbjct: 136 KVQAL----DMVE-SEVEE-SDQSLPPPELQRS-LADALASSFGYCSLANEHAMDPLAGS 188
Query: 341 LALGW 345
L+LG+
Sbjct: 189 LSLGF 193
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 63/72 (87%), Gaps = 1/72 (1%)
Query: 345 WCHHLARDVYHRPFTARDDDELLRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRSGF 404
W HHLARDVYHRPFTARDDDELLRLHYRLGD WK+IG AVYGRTSR+M HRWRELRRSGF
Sbjct: 69 WRHHLARDVYHRPFTARDDDELLRLHYRLGDRWKEIGRAVYGRTSRIMKHRWRELRRSGF 128
Query: 405 -LAAAARTEQKL 415
LAA AR Q L
Sbjct: 129 PLAATARKVQAL 140
>Os02g0724400
Length = 281
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 345 WCHHLARDVYHRPFTARDDDELLRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRSGF 404
W HHLARDVYHRPFTARDD+EL+RLH G W+KI +VYGRTS +M RW +LRRSG
Sbjct: 145 WRHHLARDVYHRPFTARDDEELVRLHRHTGGSWRKISRSVYGRTSAIMRDRWIQLRRSGL 204
Query: 405 LAAAARTEQ 413
+ AA+T +
Sbjct: 205 VPDAAKTAE 213
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 221 DVYHRPFTARDDDELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRWXXXXXXXXXXXXXXX 280
DVYHRPFTARDD+EL+RLH G W++I R+VYGRTS +M+ RW
Sbjct: 152 DVYHRPFTARDDEELVRLHRHTGGSWRKISRSVYGRTSAIMRDRWIQLRRSGLVPDAAKT 211
Query: 281 XXXX----XXXXDDMVETSEVEEPADQSLPSLELQRSTLADTLASSFGSCSLATDHVMDP 336
D SE E +S P Q+ LAD LASS SC+LA+D DP
Sbjct: 212 AENAGCPPPAADDSEYMGSEAEL---KSPPPPPQQQHPLADVLASSLDSCTLASD-ATDP 267
Query: 337 LAGSLAL 343
G LAL
Sbjct: 268 RDGILAL 274
>Os07g0434125
Length = 208
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 233 DELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRWXXXXXXXXXXXXXXXXXXXXXXXDDMV 292
DELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRW DDMV
Sbjct: 72 DELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRWRELRRGGFPAAATRKEQAPAMDADDMV 131
Query: 293 ETSEVEEPADQSLPSLELQRSTLADTL---ASSFGSCSLATDHVMDPLAGSL 341
E SE+EE +DQSLP L STL+ TL AS + T + P A L
Sbjct: 132 E-SEMEE-SDQSLPPL----STLSRTLLPRASVLAALPTTTQWIPWPAASRL 177
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/50 (84%), Positives = 43/50 (86%)
Query: 364 DELLRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRSGFLAAAARTEQ 413
DELLRLHYRLGD WK+IG AVYGRTSRVM HRWRELRR GF AAA R EQ
Sbjct: 72 DELLRLHYRLGDRWKEIGRAVYGRTSRVMKHRWRELRRGGFPAAATRKEQ 121
>Os01g0393300
Length = 316
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 44/53 (83%)
Query: 431 QSLPTTRKSIIATGRKGSLQAGQPSACKPTTVKIADLRRRGGRPPAKIIFAGG 483
Q + T RKSIIA+G+KGS QAG+PSACK TT+KIA L R GRPPAKIIFAGG
Sbjct: 257 QVIRTIRKSIIASGQKGSSQAGRPSACKQTTMKIAGLLMRSGRPPAKIIFAGG 309
>Os06g0250760
Length = 169
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Query: 345 WCHHLARDVYHRPFTARDDDELLRLHYRLGDC--------WKKIGHAVYGRTSRVMNHRW 396
W HLARDV+HRPFTA DD EL RL RL D WK + AVYGR+S + RW
Sbjct: 77 WGDHLARDVFHRPFTAADDAELARLCLRLDDDAGFAAGRRWKDVSRAVYGRSSCAVKRRW 136
Query: 397 RELRRS-GFLAA 407
RELRRS FL A
Sbjct: 137 RELRRSDAFLGA 148
>Os01g0210200
Length = 275
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 345 WCHHLARDVYHRPFTARDDDEL--LRLHYRLGDCWKKIGHAVYGRTSRVMNHRWRELRRS 402
W HLARDVYHRPFTA DD EL LRL GD WK I A + RTSR M RWRELR+S
Sbjct: 157 WRDHLARDVYHRPFTADDDAELAHLRLRGGGGDRWKDISRAAHCRTSRAMRRRWRELRKS 216
Query: 403 -GFLAA 407
FL A
Sbjct: 217 DAFLRA 222
>Os06g0258200
Length = 178
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 345 WCHHLARDVYHRPFTARDDDELLRLHYRL---GDCWKKIGHAVYGRTSRVMNHRWREL 399
W HLARDV+HRP+TA DDDEL RL R GD WK I AV+GR+SR + RW E+
Sbjct: 81 WRDHLARDVFHRPYTAADDDELTRLVLRPGGGGDRWKDISRAVHGRSSRSVKRRWMEI 138
>Os06g0258300
Length = 153
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 348 HLARDVYHRPFTARDDDELLRLHYRL---GDCWKKIGHAVYGRTSRVMNHRWREL 399
HLARDV+HRPFTA DDDEL RL R GD WK I AV+GR+SR + RW E+
Sbjct: 71 HLARDVFHRPFTAADDDELTRLVLRPGGGGDRWKDISRAVHGRSSRSVKRRWMEI 125
>Os03g0309600
Length = 189
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 345 WCHHLARDVYHRPFTARDDDELLRLHYRLGDC---WKKIGHAVYGRTSRVMNHRWRELRR 401
W HLARDV+HR FT+ DD EL RL L D WK + AVYGR+S + RWRELR+
Sbjct: 74 WRDHLARDVFHRHFTSADDTELARLCLHLDDAGHRWKHVSRAVYGRSSCAVKRRWRELRK 133
Query: 402 S-GFLAAAAR 410
S FL+A R
Sbjct: 134 SDAFLSALWR 143
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,880,675
Number of extensions: 687429
Number of successful extensions: 1961
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1953
Number of HSP's successfully gapped: 18
Length of query: 507
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 402
Effective length of database: 11,553,331
Effective search space: 4644439062
Effective search space used: 4644439062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)