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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0350400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 40S ribosomal protein S23-2 (S12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0445) R2 : 0.423
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.72 (0.203) R2dC : 0.807 R2C : -0.774
β3 : -2.68 (0.173) R2dE : 1.07 R2E : -0.516
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.819 (0.0938) R2dN8 : 0.125 R2N8 : 0.114
σ : 0.836
deviance : 322.01
__
_____
C
peak time of C : 1.93
E
wheather : radiation
threshold : 0.7166
memory length : 47
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.06
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.29 0.82 4.05 0.754 2.67 -2.63 3.24 -2.64 0.908 1.95 0.9582 49 6.09 --
312.15 0.823 4.06 0.667 2.74 -2.76 0.463 -- 0.905 1.76 1.07 45 6.21 --
312.53 0.823 4.06 0.64 2.53 -2.47 -- -0.229 0.884 2.12 0.78 47 6 --
312.15 0.823 4.07 0.623 2.71 -2.66 -- -- 0.885 1.93 0.7834 47 6.01 --
411.32 0.95 4.04 0.729 -- -0.922 -- -0.423 0.957 -- 0.009717 4 8.68 --
384.62 0.919 4 0.698 1.3 -- 1.16 -- 0.955 7.39 -- -- -- --
388.23 0.923 4 0.725 1.3 -- -- -- 0.954 7.46 -- -- -- --
410.51 0.948 4.03 0.719 -- -0.971 -- -- 0.963 -- 1.04 4 9.5 --
322.01 0.836 4.08 -- 2.72 -2.68 -- -- 0.819 1.93 0.7166 47 6.06 --
478.93 1.02 4.03 0.745 -- -- -- -- 0.974 -- -- -- -- --
402.1 0.938 4.02 -- 1.31 -- -- -- 0.873 7.43 -- -- -- --
424 0.959 4.06 -- -- -0.991 -- -- 0.864 -- 1.013 2 9.37 --
493.59 1.04 4.05 -- -- -- -- -- 0.892 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.31 precipitation 0.1 270 < th dose independent rect. 3 2
2 300.31 precipitation 0.1 270 < th dose dependent rect. 3 2
3 300.48 wind 5.0 270 < th dose independent rect. 3 2
4 301.78 wind 7.0 270 < th dose independent rect. 6 8
6 302.12 temperature 15.0 270 > th dose independent rect. 5 22
7 302.56 precipitation 0.1 270 < th dose independent rect. 14 16
8 302.56 precipitation 0.1 270 < th dose dependent rect. 14 16
9 302.78 wind 5.0 270 < th dose independent rect. 2 4
10 303.18 radiation 1.0 270 < th dose dependent rect. 5 21
11 303.34 wind 9.0 270 < th dose dependent rect. 3 2
13 303.50 temperature 25.0 270 < th dose independent rect. 3 2
14 303.53 wind 9.0 270 < th dose independent rect. 5 22
15 303.74 temperature 15.0 270 > th dose independent rect. 6 8
16 303.78 wind 7.0 10 < th dose independent rect. 9 19
18 304.09 precipitation 0.1 270 < th dose independent rect. 2 4
19 304.09 precipitation 0.1 270 < th dose dependent rect. 2 4
20 304.43 radiation 1.0 270 < th dose independent rect. 3 2
22 304.44 radiation 10.0 270 < th dose dependent rect. 3 2
28 304.55 temperature 10.0 270 > th dose independent rect. 3 2
31 304.55 humidity 50.0 270 > th dose independent rect. 3 2
34 304.55 atmosphere 995.0 270 > th dose independent rect. 3 2
35 304.55 atmosphere 1010.0 270 < th dose independent rect. 3 2
42 304.66 temperature 15.0 270 > th dose independent rect. 6 20
43 304.72 wind 7.0 270 < th dose independent rect. 14 16
45 305.18 humidity 60.0 270 > th dose independent rect. 17 9
46 305.36 wind 9.0 30 < th dose dependent rect. 4 5
49 305.56 precipitation 0.1 270 < th dose independent rect. 6 8
50 305.56 precipitation 0.1 270 < th dose dependent rect. 6 8
52 305.70 atmosphere 995.0 270 > th dose independent rect. 6 8
53 305.70 atmosphere 1015.0 270 < th dose independent rect. 6 8
54 305.70 temperature 10.0 270 > th dose independent rect. 14 16
55 305.70 radiation 1.0 270 < th dose dependent rect. 11 15
57 305.78 radiation 10.0 270 < th dose dependent rect. 17 9
60 305.96 humidity 50.0 270 > th dose dependent rect. 3 2
63 305.99 radiation 10.0 270 < th dose independent rect. 2 4
68 306.16 temperature 10.0 270 > th dose dependent rect. 3 3
70 306.44 wind 9.0 270 < th dose independent rect. 6 20
71 306.46 precipitation 0.1 270 < th dose independent rect. 2 15
72 306.46 precipitation 0.1 270 < th dose dependent rect. 2 15
73 306.50 atmosphere 1010.0 270 < th dose independent rect. 2 4
74 306.52 radiation 1.0 270 < th dose independent rect. 11 15
75 306.57 wind 5.0 30 < th dose independent rect. 4 5
80 306.73 wind 9.0 270 < th dose dependent rect. 2 4
83 306.79 radiation 1.0 30 < th dose dependent sin 12 NA
84 306.80 humidity 70.0 30 > th dose independent rect. 4 5
85 306.85 radiation 1.0 270 < th dose independent rect. 16 10
90 306.96 radiation 30.0 90 < th dose independent rect. 15 16
98 307.09 wind 5.0 270 < th dose independent rect. 1 6
101 307.16 radiation 1.0 30 > th dose independent rect. 16 15
106 307.24 temperature 10.0 270 > th dose independent rect. 2 4
108 307.24 temperature 30.0 270 < th dose independent rect. 2 4
109 307.24 humidity 50.0 270 > th dose independent rect. 2 4
112 307.24 atmosphere 995.0 270 > th dose independent rect. 2 4
124 307.38 radiation 30.0 30 < th dose independent rect. 4 5
131 307.71 wind 9.0 270 < th dose dependent rect. 6 8
135 307.80 radiation 40.0 270 < th dose dependent rect. 2 4
146 308.29 temperature 15.0 30 > th dose independent rect. 9 19
152 308.40 humidity 50.0 270 > th dose independent rect. 6 20
161 308.50 precipitation 0.1 30 < th dose independent rect. 4 5
162 308.50 precipitation 0.1 30 < th dose dependent rect. 4 5
163 308.51 temperature 30.0 270 < th dose independent rect. 17 9
175 308.61 humidity 50.0 270 > th dose dependent rect. 2 4
177 308.68 wind 7.0 10 < th dose independent rect. 9 7
181 308.73 radiation 1.0 30 < th dose independent sin 12 NA
183 308.73 temperature 10.0 30 > th dose independent rect. 4 5
185 308.73 temperature 30.0 30 < th dose independent rect. 4 5
186 308.73 humidity 50.0 30 > th dose independent rect. 4 5
188 308.73 atmosphere 995.0 30 > th dose independent rect. 4 5
189 308.73 atmosphere 1015.0 30 < th dose independent rect. 4 5
193 308.86 temperature 15.0 270 > th dose independent rect. 7 18
194 308.92 precipitation 0.1 270 < th dose independent rect. 1 6
195 308.92 precipitation 0.1 270 < th dose dependent rect. 1 6
197 308.96 atmosphere 995.0 90 > th dose independent rect. 15 16
212 309.38 precipitation 0.1 90 < th dose independent rect. 4 15
213 309.38 precipitation 0.1 90 < th dose dependent rect. 4 15
239 309.54 radiation 1.0 270 < th dose independent rect. 6 20
244 309.63 radiation 1.0 30 > th dose independent sin 12 NA
256 309.78 radiation 1.0 270 > th dose independent rect. 6 8
259 309.81 temperature 10.0 30 > th dose dependent rect. 4 5
275 310.31 temperature 15.0 270 > th dose independent rect. 18 8
300 310.71 wind 9.0 270 < th dose independent rect. 17 9
301 310.71 temperature 10.0 270 > th dose independent rect. 2 16
302 310.71 atmosphere 1015.0 270 < th dose independent rect. 2 16
303 310.72 wind 9.0 90 < th dose independent rect. 19 9
315 310.78 atmosphere 995.0 90 > th dose independent rect. 19 9
321 310.78 temperature 10.0 90 > th dose independent rect. 4 15
322 310.78 atmosphere 1015.0 90 < th dose independent rect. 4 15
330 310.87 wind 9.0 270 < th dose dependent rect. 1 6
347 311.05 humidity 50.0 270 > th dose independent rect. 7 18
366 311.47 radiation 20.0 270 < th dose independent rect. 1 6
368 311.48 humidity 50.0 30 > th dose dependent rect. 4 5
380 311.53 humidity 70.0 270 > th dose independent rect. 1 6
387 311.73 temperature 10.0 270 > th dose independent rect. 1 6
390 311.73 humidity 50.0 270 > th dose independent rect. 1 6
393 311.73 atmosphere 995.0 270 > th dose independent rect. 1 6
394 311.73 atmosphere 1015.0 270 < th dose independent rect. 1 6
410 312.06 radiation 1.0 90 > th dose independent rect. 18 12
419 312.25 precipitation 0.1 270 < th dose independent rect. 6 20
420 312.25 precipitation 0.1 270 < th dose dependent rect. 6 20
424 312.33 atmosphere 995.0 30 > th dose dependent rect. 4 5
430 312.43 wind 9.0 270 < th dose independent rect. 2 16
431 312.45 radiation 40.0 270 < th dose dependent rect. 1 6
457 312.67 atmosphere 995.0 270 > th dose independent rect. 2 15
460 312.68 atmosphere 995.0 270 > th dose dependent rect. 3 2
495 313.14 humidity 50.0 270 > th dose dependent rect. 1 6
561 313.89 precipitation 0.1 270 < th dose independent rect. 18 8
562 313.89 precipitation 0.1 270 < th dose dependent rect. 18 8
568 314.01 atmosphere 995.0 90 > th dose independent rect. 4 15
571 314.04 wind 9.0 90 < th dose independent rect. 4 15
606 314.55 radiation 30.0 10 < th dose independent rect. 16 17
629 314.74 precipitation 0.1 30 < th dose independent rect. 9 19
631 314.74 precipitation 0.1 30 < th dose dependent rect. 9 19
693 315.17 radiation 40.0 10 < th dose dependent rect. 4 5
718 315.53 atmosphere 995.0 270 > th dose dependent rect. 2 4
726 315.73 wind 7.0 10 < th dose independent rect. 7 9
731 315.81 precipitation 0.1 270 < th dose independent rect. 7 18
734 315.81 precipitation 0.1 270 < th dose dependent rect. 7 18
735 315.83 precipitation 0.1 10 < th dose independent rect. 16 17
736 315.83 precipitation 0.1 10 < th dose dependent rect. 16 17
749 316.05 wind 9.0 30 < th dose dependent rect. 16 17
775 316.33 humidity 50.0 270 > th dose independent rect. 6 8
778 316.35 precipitation 0.1 270 < th dose independent rect. 5 22
779 316.35 precipitation 0.1 270 < th dose dependent rect. 5 22
819 316.75 atmosphere 995.0 10 > th dose independent rect. 16 17
870 316.87 atmosphere 995.0 30 > th dose independent rect. 9 19
878 316.93 wind 9.0 10 < th dose dependent rect. 9 7
890 317.06 wind 9.0 30 < th dose dependent rect. 9 19
896 317.13 temperature 20.0 10 > th dose independent rect. 9 7
933 317.36 temperature 10.0 10 > th dose independent rect. 9 7
935 317.36 atmosphere 1015.0 10 < th dose independent rect. 9 7
936 317.36 precipitation 0.1 10 < th dose independent rect. 9 7
937 317.36 temperature 10.0 10 > th dose independent rect. 16 17
939 317.36 precipitation 0.1 10 < th dose dependent rect. 9 7
971 317.74 atmosphere 1015.0 30 < th dose independent rect. 9 19
975 317.79 wind 9.0 10 < th dose independent rect. 16 17
987 317.93 radiation 40.0 1440 > th dose dependent rect. 13 2