BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0326800 Os10g0326800|J065013K05
(479 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0326800 Cyclin-like F-box domain containing protein 835 0.0
Os10g0326400 Cyclin-like F-box domain containing protein 504 e-143
Os10g0183800 155 9e-38
Os10g0197800 154 2e-37
Os01g0751100 114 1e-25
Os05g0441200 108 1e-23
Os07g0248132 67 3e-11
>Os10g0326800 Cyclin-like F-box domain containing protein
Length = 479
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/463 (90%), Positives = 421/463 (90%)
Query: 17 DDGWLSLSVSTVSGESNQKRLKRXXXXXXXXXXXXAVEDDGCPLHDEVLLLVFAECSLET 76
DDGWLSLSVSTVSGESNQKRLKR AVEDDGCPLHDEVLLLVFAECSLET
Sbjct: 17 DDGWLSLSVSTVSGESNQKRLKRGGGGGGGGVGGGAVEDDGCPLHDEVLLLVFAECSLET 76
Query: 77 DDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGALAVGFVQQRRQENXXXXXXXXXX 136
DDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGALAVGFVQQRRQEN
Sbjct: 77 DDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGALAVGFVQQRRQENSSSSSGAPPP 136
Query: 137 XRFIPLPSYSSRFAGGGELDKVFDSGLLSNSRLIASRKGXXXXXXXXXXXXXXXXXXXCN 196
RFIPLPSYSSRFAGGGELDKVFDSGLLSNSRLIASRKG CN
Sbjct: 137 PRFIPLPSYSSRFAGGGELDKVFDSGLLSNSRLIASRKGLLVLELRRSSRAAAVRLVVCN 196
Query: 197 PMTGDMATLPILAGKDRPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRNFTA 256
PMTGDMATLPILAGKDRPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRNFTA
Sbjct: 197 PMTGDMATLPILAGKDRPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRNFTA 256
Query: 257 CRSYWSDTKAWDAEGKLSGAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVVRLGALKATT 316
CRSYWSDTKAWDAEGKLSGAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVVRLGALKATT
Sbjct: 257 CRSYWSDTKAWDAEGKLSGAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVVRLGALKATT 316
Query: 317 ETFPSKWCSKLCFCYGSPVQNRQLAVTPDGRLCAVQVDRHVTSNNTVRINVISRHDGYGP 376
ETFPSKWCSKLCFCYGSPVQNRQLAVTPDGRLCAVQVDRHVTSNNTVRINVISRHDGYGP
Sbjct: 317 ETFPSKWCSKLCFCYGSPVQNRQLAVTPDGRLCAVQVDRHVTSNNTVRINVISRHDGYGP 376
Query: 377 PTWECDNARDVELNRVLPMANVRRVCLRGVCERSGVVFLAIGTDLYNQQPDLALYALDMD 436
PTWECDNARDVELNRVLPMANVRRVCLRGVCERSGVVFLAIGTDLYNQQPDLALYALDMD
Sbjct: 377 PTWECDNARDVELNRVLPMANVRRVCLRGVCERSGVVFLAIGTDLYNQQPDLALYALDMD 436
Query: 437 KKEARKVAAPPGHCRRLSSSFFGYEMDRVAYLASLSGGESIAS 479
KKEARKVAAPPGHCRRLSSSFFGYEMDRVAYLASLSGGESIAS
Sbjct: 437 KKEARKVAAPPGHCRRLSSSFFGYEMDRVAYLASLSGGESIAS 479
>Os10g0326400 Cyclin-like F-box domain containing protein
Length = 476
Score = 504 bits (1297), Expect = e-143, Method: Compositional matrix adjust.
Identities = 278/476 (58%), Positives = 331/476 (69%), Gaps = 30/476 (6%)
Query: 18 DGWLSLSVSTVS---GESNQKRLKRXXXXXXXXXXXXAVEDDGCPLHDEVLLLVFAECSL 74
DGWLSLSVST S GESN KRLKR +VEDDG PLHDEVLLLVFA SL
Sbjct: 15 DGWLSLSVSTESTGSGESN-KRLKRGGGGG-------SVEDDGFPLHDEVLLLVFAASSL 66
Query: 75 ETDDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGALAVGFVQQRRQENXXXXXXXX 134
+ DLVRC ATCRRWRRLV G+AEYICR PS R + LAVGF Q ++
Sbjct: 67 DLHDLVRCTATCRRWRRLVTGNAEYICRSMLPSSRLIRDLAVGFFHQSHEDESSSSVVPP 126
Query: 135 XXXRFIPLPSYSSRFAGGGELDKVFDS-GLLSNSRLIASRKGXXXXXXXXXXXXXXXXXX 193
RF+PLPS SSRF GGGELD+V D+ GL NSRL+ASRKG
Sbjct: 127 ---RFVPLPSASSRF-GGGELDRVLDNPGLFKNSRLVASRKGRLVVELRRASRAAALRLV 182
Query: 194 XCNPMTGDMATLPILAGKDRPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRN 253
CNPMTGDM+ LP+L+GKDRPG YACAL+T DD + + D L PAAFRL+++YKRR+
Sbjct: 183 VCNPMTGDMSVLPVLSGKDRPGLYACALLTADDLQDSADPLP--PGPAAFRLVVLYKRRS 240
Query: 254 FTACRSYWSDTKAWDAEGKLSGAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVVRLGALK 313
FTACRSY SDT AW E KLSG KIGG+RLG+M V RG VFWL+ +++FV+ L L
Sbjct: 241 FTACRSYSSDTNAWSTERKLSGVKIGGKRLGDMAAGVTFRGRVFWLVNSVVFVLHLDTLV 300
Query: 314 ATTE--TFPSKWCSKLCFCYGSPVQNRQLAVTPDGRLCAVQVDRHVTSNNTVRINVISRH 371
ATTE ++ +W K CFC G PV NR+LAV+PDGRLC VQV R++ + N V INV +RH
Sbjct: 301 ATTENISWHWRWNGKPCFCLGDPVPNRRLAVSPDGRLCVVQVGRNLRTYNPV-INVFARH 359
Query: 372 DGYG-------PPTWECDNARDVELNRVLPMANVRRVCLRGVCERSGVVFLAIGTDLYNQ 424
D G W+ + A DVEL+ ++P+ANV+RVCLRGVCE+SG++FLAIG D+Y +
Sbjct: 360 DSGGCNGSTAQKIRWKVEEAHDVELSHLIPLANVKRVCLRGVCEKSGLIFLAIGADMYAK 419
Query: 425 QPDLALYALDMDKKEARKVAAPPGHC--RRLSSSFFGYEMDRVAYLASLSGGESIA 478
+PDLALYALDM+KKEAR V APPG C RR S SFFGYE+DRV YLASL+GG+S A
Sbjct: 420 KPDLALYALDMEKKEARLVPAPPGRCCVRRSSWSFFGYELDRVDYLASLAGGDSTA 475
>Os10g0183800
Length = 448
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 134/415 (32%), Positives = 180/415 (43%), Gaps = 31/415 (7%)
Query: 62 DEVLLLVFAECSLETDDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGALAVGFVQQ 121
D VL VF + DLVRCAATCRRW R++ A +CR P + + LA+GF Q
Sbjct: 55 DSVLANVFTRFP-DAADLVRCAATCRRWSRVITDAAVLLCRSLPLPQPVLPRLALGFFYQ 113
Query: 122 RRQENXXXXXXXXXXX-RFIPLPSYSSRFAGGGELDKVFDSGLLSNSRLIASRKGXXXXX 180
RF+P + + G L + G SR + SR G
Sbjct: 114 EAAAGKRKRSAAAGQTCRFVPTAAGARLL--GPSLSPFVEDG--EYSRPVTSRNGRVVLE 169
Query: 181 XXXXXXXXXXXXXXCNPMTGDMATLPILAGKDRPGHYACALITFDDHEGAPDRLGFVHDP 240
NPMTGD+ATLP L G D+PG YACAL+T DD + P P
Sbjct: 170 LRREGHADGLKLCVWNPMTGDVATLPPLHGDDKPGAYACALLTADDLDDPPPS-----SP 224
Query: 241 AAFRLLLVYKRRNFTACRSYWSDTKAWDAEG-KLSGAKIGGRRLGEMTGAVAVRGSVFWL 299
FR+++VY RR +TA RSY SDT W AE + SG K+ L + +V G +W
Sbjct: 225 TFFRVVVVYNRRTYTALRSYSSDTGRWSAEARRSSGPKMSSYTLHNLRQSVVHGGVAYWP 284
Query: 300 LKNLLFVVRLGALKATTETFPSKWCSKLCFCYGSPVQNRQLAVTPDGRLCAVQVDRHVTS 359
L + F VR +T + +P + L ++PDG+L + R+
Sbjct: 285 LAHTAFAVR-------ADTPEPEEMPMPPAVPKAPPHDHLLGISPDGKLSFIVTSRYFDG 337
Query: 360 NNTVRINVISRHDGYGPPTWECDNARDVELNRV-LPMANVRR---VCLRGVCERSGVVFL 415
+ V H +G V RV L V R + LR CERSG++F
Sbjct: 338 SAGVS---SCYHLAFGSNGGCTREQVSVCTWRVRLHELRVHRSDAMNLRWFCERSGLLFF 394
Query: 416 AIGTDLYNQQPDLALYALDMDKKEARKVAAPPGHCRRLSSSFFGYEMDRVAYLAS 470
I Y L++ KE KVA CR ++F GYEMD+ +Y S
Sbjct: 395 TIDA---KGSSTPGAYVLNIATKELEKVADDI-DCRSW-TNFVGYEMDQASYYLS 444
>Os10g0197800
Length = 447
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 189/445 (42%), Gaps = 69/445 (15%)
Query: 60 LHDEVLLLVFAECSLETDDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGALAVGFV 119
L D+VL +F D+VRCAATCRRW +VA +A+ + R PP + LA+G
Sbjct: 40 LTDDVLAAIFTRLP-NAADVVRCAATCRRWASVVAKEADALSRALPP----LPGLALGLF 94
Query: 120 QQRRQENXXXXXXXXXXXR-------------FIP-----------LPSYSSRFAGGGEL 155
Q RQ+ + F+P LPS ++ +GG
Sbjct: 95 HQDRQDTAGAATTNTRKRKRRSTGLECSAPPCFVPTASGARLLGFNLPSTTALRSGGQHG 154
Query: 156 DKVFDSGLLSNSRLIASRKGXXXXXXXXXXXXXXXXXX-XCNPMTGDMATLPILAGKDRP 214
V D LS+SR IASR G CNPM GD+A LP L G DRP
Sbjct: 155 HGVLD---LSHSRPIASRNGRLVLELQSEGHVDRSLRLCVCNPMMGDVAVLPTLLGNDRP 211
Query: 215 GHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRNFTACRSYWSDTKAWDAEG-KL 273
YAC L+T D + R FR+L++Y R FTA RSY SDT +W E K
Sbjct: 212 KIYACTLLTGADLDLDRPRHA---SSDFFRVLIIYNRDRFTAFRSYSSDTCSWSMETKKT 268
Query: 274 SGAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVVRLGALKATTETFPSKWCSKLCFCYGS 333
SG K+ LG++ + + G +W LK VR P +
Sbjct: 269 SGPKLTNWDLGKLGQGIVLHGVAYWPLKRTALAVRFDTPAPAQVRMPPDGVP-------N 321
Query: 334 PVQN-RQLAVTPDGRLCAVQVDRHVTSNNTVRINVISRHDGYGPPTW--ECDNARDVELN 390
P+Q R L+VTPDG+LC + + VR V G W EC V
Sbjct: 322 PLQQLRLLSVTPDGKLCLLDAGNGAGYASFVR-TVFEASTG----EWVREC----SVTST 372
Query: 391 RVLPMANVRRVCLRGVCERSGVVFLAIGTDLYNQQPDLALYALDMDKKEARKVAAPPGHC 450
R L + + + LR CE SG++ +G N +A+ + KE K+ H
Sbjct: 373 R-LKVKSAADINLRWFCENSGILLFTLGRGSSNP----GTFAMSLATKEVEKL-----HD 422
Query: 451 RRLSSS---FFGYEMDRVAYLASLS 472
SS F GYEMD V YL S++
Sbjct: 423 SVDCSSWRNFVGYEMDGVTYLKSIA 447
>Os01g0751100
Length = 304
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 126/282 (44%), Gaps = 45/282 (15%)
Query: 54 EDDGCPLHDEVLLLVFAECSLETDDLVRCAATCRRWRRLVAGDAEYICRRKP--PSRRYV 111
+ +G L D+ L F D+VRCAATCRRW +VA +A + R P P R
Sbjct: 40 DANGTSLTDDALAATFTRLP-NAADVVRCAATCRRWASVVAKEANALSRALPLLPGR--- 95
Query: 112 GALAVGFVQQ----------RRQENXXXXXXXXXXXRFIPLPSYSSRFAG---------- 151
A+GF + R+++ F+P ++ SR G
Sbjct: 96 ---ALGFFHKEQDAAAVATTRKRKRRAIIVDYSTPPCFVPT-AFGSRLLGYNLPSASALP 151
Query: 152 -GGELDKVFDSGLL--SNSRLIASRKGXXXXXXXXXXXXXXXXXX--XCNPMTGDMATLP 206
G + D + GLL S SR +ASR G CNPMTGD+A LP
Sbjct: 152 LGVQTDAL---GLLDLSLSRPVASRNGRLVLELQSEEHVNDGKLNLCVCNPMTGDVAVLP 208
Query: 207 ILAGKDRPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRNFTACRSYWSDTKA 266
L+GKDRP YAC L+T D + P F FR+L+VY R FTA RSY SDT +
Sbjct: 209 PLSGKDRPRMYACTLLTDADIDQPPPSANF------FRVLIVYNRDRFTAFRSYSSDTGS 262
Query: 267 WDAEGKLS-GAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVV 307
W E K + G K+ LG++ + + +W L+ V
Sbjct: 263 WSMEAKKTPGPKLTNWDLGKLGHGIVLHAVAYWPLRRTTLAV 304
>Os05g0441200
Length = 319
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 65/82 (79%), Gaps = 3/82 (3%)
Query: 195 CNPMTGDMATL-PILAGKDRPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRN 253
CNP+TG+MA L P+L+GKDRPG YACAL+T DD + + D L PAAFRLL++YKRR+
Sbjct: 114 CNPLTGEMAILLPVLSGKDRPGLYACALLTADDLQDSADPL--PPGPAAFRLLVLYKRRS 171
Query: 254 FTACRSYWSDTKAWDAEGKLSG 275
FTACRSY SDTKAW E KLSG
Sbjct: 172 FTACRSYSSDTKAWSTERKLSG 193
>Os07g0248132
Length = 206
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 196 NPMTGDMATLPILAGKDRPGH-YACALITFDDHE----GAPDRLGFVHDPAAFRLLLVYK 250
P + LP L G DRP YACAL+T DD + G + + P+++R++L+Y
Sbjct: 27 EPYPEAVDVLPHLRGSDRPPRLYACALLTVDDLQYFNLGNDEDDHYTTSPSSYRVVLMYN 86
Query: 251 RRNFTACRSYWSDTKAWDAEGKLSGAKIGGRRLGEMTGAVAVRGSVFW-LLKNLLFVVRL 309
RR FTA R + S + W AE + GA+ G R V RG V W LK L +
Sbjct: 87 RRGFTAARWFASGSGQWGAEVRAEGARAGRMRQHTAAAMVVHRGMVVWPRLKLALLRLPK 146
Query: 310 GALKATTETFPSKWCSKLCFCYGSPVQNRQLAVTPDGRLCAVQVDRHVTSNNTVRINVIS 369
++ T + L P GRLC +V S + RI V
Sbjct: 147 AGVRGVYRT-----------------EGSLLGSLPYGRLCWAEV-----SWDKTRIRVFF 184
Query: 370 RH 371
H
Sbjct: 185 TH 186
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,229,986
Number of extensions: 651820
Number of successful extensions: 1374
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 7
Length of query: 479
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 374
Effective length of database: 11,553,331
Effective search space: 4320945794
Effective search space used: 4320945794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)