BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0326400 Os10g0326400|AK107248
(476 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0326400 Cyclin-like F-box domain containing protein 843 0.0
Os10g0326800 Cyclin-like F-box domain containing protein 469 e-132
Os10g0183800 176 2e-44
Os10g0197800 158 9e-39
Os05g0441200 151 8e-37
Os01g0751100 115 7e-26
Os07g0248132 80 4e-15
>Os10g0326400 Cyclin-like F-box domain containing protein
Length = 476
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/476 (88%), Positives = 422/476 (88%)
Query: 1 MLPPPPLRSVAASGDGWXXXXXXXXXXXXXXXNKRLKRXXXXXSVEDDGFPLHDEVLLLV 60
MLPPPPLRSVAASGDGW NKRLKR SVEDDGFPLHDEVLLLV
Sbjct: 1 MLPPPPLRSVAASGDGWLSLSVSTESTGSGESNKRLKRGGGGGSVEDDGFPLHDEVLLLV 60
Query: 61 FAASSLDLHDLVRCTATCRRWRRLVTGNAEYICRSMLPSSRLIRDLAVGFFHQSHEDEXX 120
FAASSLDLHDLVRCTATCRRWRRLVTGNAEYICRSMLPSSRLIRDLAVGFFHQSHEDE
Sbjct: 61 FAASSLDLHDLVRCTATCRRWRRLVTGNAEYICRSMLPSSRLIRDLAVGFFHQSHEDESS 120
Query: 121 XXXXXXXXXXXXXASSRFGGGELDRVLDNPGLFKNSRLVASRKGXXXXXXXXXXXXXXXX 180
ASSRFGGGELDRVLDNPGLFKNSRLVASRKG
Sbjct: 121 SSVVPPRFVPLPSASSRFGGGELDRVLDNPGLFKNSRLVASRKGRLVVELRRASRAAALR 180
Query: 181 XXXCNPMTGDMSVLPVLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRLVVLYKRRS 240
CNPMTGDMSVLPVLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRLVVLYKRRS
Sbjct: 181 LVVCNPMTGDMSVLPVLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRLVVLYKRRS 240
Query: 241 FTACRSYSSDTNAWSTERKLSGVKIGGKRLGDMAAGVTFRGRVFWLVNSVVFVLHLDTLV 300
FTACRSYSSDTNAWSTERKLSGVKIGGKRLGDMAAGVTFRGRVFWLVNSVVFVLHLDTLV
Sbjct: 241 FTACRSYSSDTNAWSTERKLSGVKIGGKRLGDMAAGVTFRGRVFWLVNSVVFVLHLDTLV 300
Query: 301 ATTENISWHWRWNGKPCFCLGDPVPNRRLAVSPDGRLCVVQVGRNLRTYNPVINVFARHD 360
ATTENISWHWRWNGKPCFCLGDPVPNRRLAVSPDGRLCVVQVGRNLRTYNPVINVFARHD
Sbjct: 301 ATTENISWHWRWNGKPCFCLGDPVPNRRLAVSPDGRLCVVQVGRNLRTYNPVINVFARHD 360
Query: 361 SGGCNGSTAQKIRWKVEEAHDVELSHLIPLANVKRVCLRGVCEKSGLIFLAIGADMYAKK 420
SGGCNGSTAQKIRWKVEEAHDVELSHLIPLANVKRVCLRGVCEKSGLIFLAIGADMYAKK
Sbjct: 361 SGGCNGSTAQKIRWKVEEAHDVELSHLIPLANVKRVCLRGVCEKSGLIFLAIGADMYAKK 420
Query: 421 PDLALYALDMEKKEARLVPAPPGRCCVRRSSWSFFGYELDRVDYLASLAGGDSTAR 476
PDLALYALDMEKKEARLVPAPPGRCCVRRSSWSFFGYELDRVDYLASLAGGDSTAR
Sbjct: 421 PDLALYALDMEKKEARLVPAPPGRCCVRRSSWSFFGYELDRVDYLASLAGGDSTAR 476
>Os10g0326800 Cyclin-like F-box domain containing protein
Length = 479
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/457 (56%), Positives = 309/457 (67%), Gaps = 26/457 (5%)
Query: 33 NKRLKRXXXXX-------SVEDDGFPLHDEVLLLVFAASSLDLHDLVRCTATCRRWRRLV 85
KRLKR +VEDDG PLHDEVLLLVFA SL+ DLVRC ATCRRWRRLV
Sbjct: 34 QKRLKRGGGGGGGGVGGGAVEDDGCPLHDEVLLLVFAECSLETDDLVRCAATCRRWRRLV 93
Query: 86 TGNAEYICRSMLPSSRLIRDLAVGFFHQSHEDEXXXXXXXXXXXXXXXA---SSRF-GGG 141
G+AEYICR PS R + LAVGF Q ++ SSRF GGG
Sbjct: 94 AGDAEYICRRKPPSRRYVGALAVGFVQQRRQENSSSSSGAPPPPRFIPLPSYSSRFAGGG 153
Query: 142 ELDRVLDNPGLFKNSRLVASRKGXXXXXXXXXXXXXXXXXXXCNPMTGDMSVLPVLSGKD 201
ELD+V D+ GL NSRL+ASRKG CNPMTGDM+ LP+L+GKD
Sbjct: 154 ELDKVFDS-GLLSNSRLIASRKGLLVLELRRSSRAAAVRLVVCNPMTGDMATLPILAGKD 212
Query: 202 RPGLYACALLTADDLQDSADPLP--PGPAAFRLVVLYKRRSFTACRSYSSDTNAWSTERK 259
RPG YACAL+T DD + + D L PAAFRL+++YKRR+FTACRSY SDT AW E K
Sbjct: 213 RPGHYACALITFDDHEGAPDRLGFVHDPAAFRLLLVYKRRNFTACRSYWSDTKAWDAEGK 272
Query: 260 LSGVKIGGKRLGDMAAGVTFRGRVFWLVNSVVFVLHLDTLVATTENISWHWRWNGKPCFC 319
LSG KIGG+RLG+M V RG VFWL+ +++FV+ L L ATTE ++ +W K CFC
Sbjct: 273 LSGAKIGGRRLGEMTGAVAVRGSVFWLLKNLLFVVRLGALKATTE--TFPSKWCSKLCFC 330
Query: 320 LGDPVPNRRLAVSPDGRLCVVQVGRNLRTYNPV-INVFARHDSGGCNGSTAQKIRWKVEE 378
G PV NR+LAV+PDGRLC VQV R++ + N V INV +RHD G W+ +
Sbjct: 331 YGSPVQNRQLAVTPDGRLCAVQVDRHVTSNNTVRINVISRHDGYG-------PPTWECDN 383
Query: 379 AHDVELSHLIPLANVKRVCLRGVCEKSGLIFLAIGADMYAKKPDLALYALDMEKKEARLV 438
A DVEL+ ++P+ANV+RVCLRGVCE+SG++FLAIG D+Y ++PDLALYALDM+KKEAR V
Sbjct: 384 ARDVELNRVLPMANVRRVCLRGVCERSGVVFLAIGTDLYNQQPDLALYALDMDKKEARKV 443
Query: 439 PAPPGRCCVRRSSWSFFGYELDRVDYLASLAGGDSTA 475
APPG C RR S SFFGYE+DRV YLASL+GG+S A
Sbjct: 444 AAPPGHC--RRLSSSFFGYEMDRVAYLASLSGGESIA 478
>Os10g0183800
Length = 448
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 192/421 (45%), Gaps = 38/421 (9%)
Query: 54 DEVLLLVFAASSLDLHDLVRCTATCRRWRRLVTGNAEYICRSM-LPSSRLIRDLAVGFFH 112
D VL VF D DLVRC ATCRRW R++T A +CRS+ LP L R LA+GFF+
Sbjct: 55 DSVLANVFTRFP-DAADLVRCAATCRRWSRVITDAAVLLCRSLPLPQPVLPR-LALGFFY 112
Query: 113 Q---SHEDEXXXXXXXXXXXXXXXASSRFGGGELDRVLDNPGLFKNSRLVASRKGXXXXX 169
Q + + + A +R G L +++ + SR V SR G
Sbjct: 113 QEAAAGKRKRSAAAGQTCRFVPTAAGARLLGPSLSPFVEDG---EYSRPVTSRNGRVVLE 169
Query: 170 XXXXXXXXXXXXXXCNPMTGDMSVLPVLSGKDRPGLYACALLTADDLQDSADPLPPGPAA 229
NPMTGD++ LP L G D+PG YACALLTADDL DP P P
Sbjct: 170 LRREGHADGLKLCVWNPMTGDVATLPPLHGDDKPGAYACALLTADDLD---DPPPSSPTF 226
Query: 230 FRLVVLYKRRSFTACRSYSSDTNAWSTE-RKLSGVKIGGKRLGDMAAGVTFRGRVFWLVN 288
FR+VV+Y RR++TA RSYSSDT WS E R+ SG K+ L ++ V G +W +
Sbjct: 227 FRVVVVYNRRTYTALRSYSSDTGRWSAEARRSSGPKMSSYTLHNLRQSVVHGGVAYWPLA 286
Query: 289 SVVFVLHLDTLVATTENISWHWRWNGKPCFCLGDPVPNRRLAVSPDGRLCVVQVGRNLRT 348
F + DT + P P + L +SPDG+L + R
Sbjct: 287 HTAFAVRADTPEPEEMPMP-----PAVP----KAPPHDHLLGISPDGKLSFIVTSRYFDG 337
Query: 349 YNPVINVF--ARHDSGGCNGSTAQKIRWKVEEAHDVELSHLIPLANVKRVCLRGVCEKSG 406
V + + A +GGC W+V H + + + LR CE+SG
Sbjct: 338 SAGVSSCYHLAFGSNGGCTREQVSVCTWRVRL-------HELRVHRSDAMNLRWFCERSG 390
Query: 407 LIFLAIGADMYAKKPDLALYALDMEKKEARLVPAPPGRCCVRRSSWSFFGYELDRVDYLA 466
L+F I A + Y L++ KE V A C RS +F GYE+D+ Y
Sbjct: 391 LLFFTIDAKGSSTP---GAYVLNIATKELEKV-ADDIDC---RSWTNFVGYEMDQASYYL 443
Query: 467 S 467
S
Sbjct: 444 S 444
>Os10g0197800
Length = 447
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 135/454 (29%), Positives = 186/454 (40%), Gaps = 82/454 (18%)
Query: 52 LHDEVLLLVFAASSLDLHDLVRCTATCRRWRRLVTGNAEYICRSMLPSSRLIRDLAVGFF 111
L D+VL +F + D+VRC ATCRRW +V A+ + R++ P + LA+G F
Sbjct: 40 LTDDVLAAIFTRLP-NAADVVRCAATCRRWASVVAKEADALSRALPP----LPGLALGLF 94
Query: 112 HQSHEDEXXXXXXXXXXXXX----------------------------XXASSRFGGGEL 143
HQ +D + R GG
Sbjct: 95 HQDRQDTAGAATTNTRKRKRRSTGLECSAPPCFVPTASGARLLGFNLPSTTALRSGGQHG 154
Query: 144 DRVLDNPGLFKNSRLVASRKGXXXXXXXXXXXXXXXXXX-XCNPMTGDMSVLPVLSGKDR 202
VLD +SR +ASR G CNPM GD++VLP L G DR
Sbjct: 155 HGVLD----LSHSRPIASRNGRLVLELQSEGHVDRSLRLCVCNPMMGDVAVLPTLLGNDR 210
Query: 203 PGLYACALLTADDLQDSADPLPPGPAAFRLVVLYKRRSFTACRSYSSDTNAWSTE-RKLS 261
P +YAC LLT DL D P FR++++Y R FTA RSYSSDT +WS E +K S
Sbjct: 211 PKIYACTLLTGADL-DLDRPRHASSDFFRVLIIYNRDRFTAFRSYSSDTCSWSMETKKTS 269
Query: 262 GVKIGGKRLGDMAAGVTFRGRVFWLVNSVVFVLHLDTLVATTENISWHWRWNGKPCFCLG 321
G K+ LG + G+ G +W + + DT +
Sbjct: 270 GPKLTNWDLGKLGQGIVLHGVAYWPLKRTALAVRFDTPAPAQVRMP-------------P 316
Query: 322 DPVPN-----RRLAVSPDGRLCVVQVGRNLRTYNPVINVFARHDSGGCNGSTAQKIRWKV 376
D VPN R L+V+PDG+LC++ G + V VF + R KV
Sbjct: 317 DGVPNPLQQLRLLSVTPDGKLCLLDAGNGAGYASFVRTVFEASTGEWVRECSVTSTRLKV 376
Query: 377 EEAHDVELSHLIPLANVKRVCLRGVCEKSGLIFLAIGADMYAKKPDLALYALDMEKKEAR 436
+ A D+ LR CE SG++ +G + +A+ + KE
Sbjct: 377 KSAADIN--------------LRWFCENSGILLFTLGRG----SSNPGTFAMSLATKEVE 418
Query: 437 LVPAPPGRCCVRRSSW-SFFGYELDRVDYLASLA 469
+ V SSW +F GYE+D V YL S+A
Sbjct: 419 KL-----HDSVDCSSWRNFVGYEMDGVTYLKSIA 447
>Os05g0441200
Length = 319
Score = 151 bits (382), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/80 (91%), Positives = 78/80 (97%), Gaps = 1/80 (1%)
Query: 184 CNPMTGDMSVL-PVLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRLVVLYKRRSFT 242
CNP+TG+M++L PVLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRL+VLYKRRSFT
Sbjct: 114 CNPLTGEMAILLPVLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRLLVLYKRRSFT 173
Query: 243 ACRSYSSDTNAWSTERKLSG 262
ACRSYSSDT AWSTERKLSG
Sbjct: 174 ACRSYSSDTKAWSTERKLSG 193
>Os01g0751100
Length = 304
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 116/271 (42%), Gaps = 46/271 (16%)
Query: 46 EDDGFPLHDEVLLLVFAASSLDLHDLVRCTATCRRWRRLVTGNAEYICRSMLPSSRLIRD 105
+ +G L D+ L F + D+VRC ATCRRW +V A + R++ L+
Sbjct: 40 DANGTSLTDDALAATFTRLP-NAADVVRCAATCRRWASVVAKEANALSRAL----PLLPG 94
Query: 106 LAVGFFHQSHEDEXXXXXXXXXXXXXXXASSR--------FGG----------------- 140
A+GFFH+ + S FG
Sbjct: 95 RALGFFHKEQDAAAVATTRKRKRRAIIVDYSTPPCFVPTAFGSRLLGYNLPSASALPLGV 154
Query: 141 -----GELDRVLDNPGLFKNSRLVASRKGXXXXXXXXXXXXXXXXXXXCNPMTGDMSVLP 195
G LD L P +N RLV + CNPMTGD++VLP
Sbjct: 155 QTDALGLLDLSLSRPVASRNGRLVLELQSEEHVNDGKLNLCV------CNPMTGDVAVLP 208
Query: 196 VLSGKDRPGLYACALLTADDLQDSADPLPPGPAAFRLVVLYKRRSFTACRSYSSDTNAWS 255
LSGKDRP +YAC LLT D+ D PP FR++++Y R FTA RSYSSDT +WS
Sbjct: 209 PLSGKDRPRMYACTLLTDADI----DQPPPSANFFRVLIVYNRDRFTAFRSYSSDTGSWS 264
Query: 256 TE-RKLSGVKIGGKRLGDMAAGVTFRGRVFW 285
E +K G K+ LG + G+ +W
Sbjct: 265 MEAKKTPGPKLTNWDLGKLGHGIVLHAVAYW 295
>Os07g0248132
Length = 206
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 185 NPMTGDMSVLPVLSGKDRPG-LYACALLTADDLQ------DSADPLPPGPAAFRLVVLYK 237
P + VLP L G DRP LYACALLT DDLQ D D P+++R+V++Y
Sbjct: 27 EPYPEAVDVLPHLRGSDRPPRLYACALLTVDDLQYFNLGNDEDDHYTTSPSSYRVVLMYN 86
Query: 238 RRSFTACRSYSSDTNAWSTERKLSGVKIGGKRLGDMAAGVTFRGRVFW 285
RR FTA R ++S + W E + G + G R AA V RG V W
Sbjct: 87 RRGFTAARWFASGSGQWGAEVRAEGARAGRMRQHTAAAMVVHRGMVVW 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,057,027
Number of extensions: 692186
Number of successful extensions: 1780
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1757
Number of HSP's successfully gapped: 7
Length of query: 476
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 371
Effective length of database: 11,553,331
Effective search space: 4286285801
Effective search space used: 4286285801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)