BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0323900 Os10g0323900|AK121412
(131 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0323900 Profilin A [Oryza sativa (japonica cultivar-gr... 272 5e-74
Os10g0323600 Profilin A [Oryza sativa (japonica cultivar-gr... 272 5e-74
Os06g0152100 Similar to Profilin-2 233 2e-62
>Os10g0323900 Profilin A [Oryza sativa (japonica cultivar-group)]
Length = 131
Score = 272 bits (695), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 121 RLGDYLVEQGL 131
RLGDYLVEQGL
Sbjct: 121 RLGDYLVEQGL 131
>Os10g0323600 Profilin A [Oryza sativa (japonica cultivar-group)]
Length = 131
Score = 272 bits (695), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 121 RLGDYLVEQGL 131
RLGDYLVEQGL
Sbjct: 121 RLGDYLVEQGL 131
>Os06g0152100 Similar to Profilin-2
Length = 131
Score = 233 bits (595), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 108/130 (83%), Positives = 121/130 (93%)
Query: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
MSWQ YVD+HLMCEI+G+HLT+AAIVGHDG+VWAQS FPQ+KPEE+T IMKDFDEPG L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
APTGLFLG TKYMVIQGEPG VIRGKKG+GGI VKKTG +L++GIYDEPMTPGQCNM+VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 121 RLGDYLVEQG 130
RLGDYL+EQG
Sbjct: 121 RLGDYLIEQG 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,142,230
Number of extensions: 207523
Number of successful extensions: 522
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 42
Effective length of database: 12,388,755
Effective search space: 520327710
Effective search space used: 520327710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)