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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0323900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Profilin A [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0291) R2 : 0.327
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.77 (0.254) R2dE : 0.328 R2E : 0.327
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00214 (0.0616) R2dN8 : 2.44e-06 R2N8 : -0.000145
σ : 0.547
deviance : 137.9
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 89.27
memory length : 1658
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3
open length of G : 0.67

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.02 0.532 3.11 -0.379 0.175 3.47 -1.5 1.86 -0.0178 3.17 89.47 1490 3.02 0.651
127.38 0.526 3.11 -0.361 0.179 3.78 -1.54 -- -0.00177 3.2 88.86 1650 3.05 0.683
135.1 0.541 3.1 -0.356 0.163 3.55 -- 1.61 -0.0254 2.56 89.48 1493 3.03 0.667
133.37 0.538 3.11 -0.341 0.182 3.83 -- -- -0.0327 2.21 89.5 1653 3.03 0.667
136.66 0.544 3.11 -0.346 -- 3.87 -- 1.13 -0.00844 -- 89.42 1499 3.03 0.651
193.16 0.652 3.14 -0.285 0.243 -- -1.45 -- -0.128 3.46 -- -- -- --
199.7 0.662 3.13 -0.26 0.237 -- -- -- -0.119 3.64 -- -- -- --
134.84 0.541 3.11 -0.346 -- 3.82 -- -- -0.0274 -- 89.55 1653 3.04 0.671
136.46 0.544 3.12 -- 0.162 3.77 -- -- -0.0228 1.55 89.44 1654 3.03 0.7
202.83 0.665 3.13 -0.25 -- -- -- -- -0.113 -- -- -- -- --
201.48 0.664 3.12 -- 0.232 -- -- -- -0.0906 3.65 -- -- -- --
137.9 0.547 3.11 -- -- 3.77 -- -- 0.00214 -- 89.27 1658 3 0.67
204.47 0.667 3.12 -- -- -- -- -- -0.0855 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.49 humidity 90 1440 < th dose dependent rect. 3 1
2 133.18 wind 5 4320 > th dose dependent rect. 20 3
5 134.52 wind 7 4320 < th dose independent rect. 19 3
11 135.22 wind 7 4320 > th dose independent rect. 19 3
13 135.44 wind 7 4320 < th dose independent rect. 19 8
21 136.08 wind 9 4320 > th dose dependent rect. 19 9
25 136.19 wind 9 4320 > th dose dependent rect. 20 1
29 136.26 wind 7 4320 > th dose independent rect. 19 8
168 141.83 atmosphere 995 14400 > th dose independent rect. 17 3
171 142.04 atmosphere 995 14400 < th dose independent rect. 18 1
174 142.04 atmosphere 995 14400 < th dose dependent rect. 18 1
210 142.82 humidity 90 1440 < th dose dependent rect. 5 1
213 143.08 humidity 80 270 < th dose dependent rect. 23 7
214 143.15 humidity 80 270 < th dose independent rect. 23 7
265 144.27 atmosphere 995 14400 > th dose independent rect. 7 13
266 144.28 atmosphere 995 14400 > th dose independent rect. 9 11
307 144.82 humidity 80 720 < th dose dependent rect. 21 6
370 145.78 radiation 1 14400 < th dose dependent rect. 24 4
382 146.19 humidity 80 1440 < th dose independent rect. 22 2
437 147.44 radiation 1 14400 < th dose dependent rect. 20 8
518 148.66 humidity 80 10 < th dose independent rect. 22 9
522 148.70 wind 7 1440 > th dose independent rect. 8 1
528 148.74 atmosphere 995 14400 < th dose independent sin 22 NA
529 148.75 humidity 80 1440 > th dose independent rect. 1 1
537 148.80 atmosphere 995 14400 > th dose independent sin 22 NA
542 148.82 humidity 80 1440 < th dose dependent rect. 21 11
544 148.85 humidity 80 1440 < th dose independent rect. 21 7
596 149.12 humidity 80 10 < th dose independent rect. 20 11
617 149.34 atmosphere 995 14400 < th dose dependent sin 22 NA
628 149.41 atmosphere 995 14400 > th dose independent rect. 20 20
633 149.45 humidity 80 1440 > th dose independent rect. 24 3
666 149.66 humidity 80 1440 < th dose independent rect. 21 10
674 149.69 atmosphere 995 14400 > th dose independent sin 3 NA
731 149.85 atmosphere 995 14400 < th dose independent sin 3 NA
802 150.09 temperature 20 4320 < th dose independent rect. 21 1
804 150.10 temperature 20 1440 > th dose independent rect. 18 1
832 150.23 humidity 80 1440 > th dose independent rect. 22 9
859 150.29 atmosphere 1005 14400 > th dose independent rect. 4 3
890 150.35 wind 7 1440 < th dose independent rect. 8 1
995 150.50 atmosphere 995 14400 > th dose independent no NA NA