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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0323600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Profilin A [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0472) R2 : 0.57
β1 : -0.798 (0.198) R2dD : 0.0228 R2D : 0.074
β2 : 3.04 (0.196) R2dC : 0.637 R2C : -0.44
β3 : -3.19 (0.196) R2dE : 0.721 R2E : -0.234
β4 : -5.21 (0.621) R2dD*C : 0.0918 R2D*C : 0.0314
β5 : 4.44 (0.674) R2dD*E : 0.0732 R2D*E : 0.0857
γ1 : -0.461 (0.102) R2dN8 : 0.0288 R2N8 : 0.049
σ : 0.852
deviance : 328.95
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C
peak time of C : 6.9
E
wheather : temperature
threshold : 20.6
memory length : 288
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.08
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.95 0.852 3.48 -0.798 3.04 -3.19 -5.21 4.44 -0.461 6.9 20.6 288 2.08 --
348.33 0.869 3.54 -1.36 3.37 -3.58 -2.83 -- -0.657 6.9 19.7 360 2.6 --
374.27 0.901 3.48 -1.07 2.83 -3.14 -- 2.1 -0.456 7.27 20.5 426 2.75 --
363.68 0.888 3.53 -1.3 3.64 -3.92 -- -- -0.571 6.48 19.51 361 3.02 --
544.73 1.09 3.44 -0.89 -- -2.44 -- 2.33 0.00305 -- 24.6 1126 1.82 --
562.83 1.11 3.7 -1.98 0.524 -- -3.28 -- -1.05 6.9 -- -- -- --
582.86 1.13 3.69 -2.03 0.609 -- -- -- -1.03 9.26 -- -- -- --
446.39 0.984 3.59 -1.01 -- -2.06 -- -- -0.441 -- 20.6 1474 2.6 --
399.42 0.931 3.45 -- 4.02 -4.42 -- -- -0.323 6.12 19.41 417 3.71 --
604.44 1.15 3.71 -2.03 -- -- -- -- -1.03 -- -- -- -- --
691.46 1.23 3.64 -- 0.611 -- -- -- -0.807 9.51 -- -- -- --
438.99 0.976 3.54 -- -- -3.26 -- -- -0.29 -- 19.83 1659 8.69 --
713.4 1.25 3.66 -- -- -- -- -- -0.805 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.59 temperature 20 270 > th dose independent sin 8 NA
2 346.23 temperature 20 4320 > th dose independent rect. 13 10
5 346.76 temperature 20 270 < th dose independent sin 8 NA
7 347.27 temperature 20 720 > th dose independent sin 13 NA
10 348.23 temperature 20 720 < th dose independent sin 12 NA
15 348.63 temperature 20 4320 > th dose independent rect. 18 4
19 349.73 temperature 20 720 < th dose independent rect. 17 17
23 350.31 temperature 20 720 > th dose independent rect. 15 16
30 350.94 temperature 20 720 < th dose independent rect. 17 14
31 350.98 temperature 20 720 < th dose independent rect. 18 12
58 353.01 temperature 20 720 > th dose independent rect. 13 20
73 353.79 temperature 20 4320 < th dose independent rect. 13 10
82 354.49 temperature 20 4320 < th dose independent rect. 18 4
89 355.15 temperature 20 270 < th dose independent rect. 23 11
91 355.20 temperature 20 4320 < th dose independent rect. 16 6
97 355.37 temperature 20 4320 > th dose independent rect. 18 1
120 356.81 temperature 20 270 < th dose independent rect. 23 21
138 357.81 temperature 20 720 > th dose independent rect. 8 23
158 358.76 temperature 20 720 < th dose independent rect. 9 21
176 359.54 temperature 20 720 > th dose independent rect. 6 23
178 359.67 temperature 20 720 > th dose independent rect. 3 23
206 360.75 temperature 20 720 > th dose independent no NA NA
247 362.83 temperature 20 720 < th dose independent no NA NA
258 363.57 temperature 20 720 > th dose independent rect. 15 23
260 363.77 temperature 20 720 < th dose independent rect. 3 23
267 364.09 temperature 20 270 > th dose independent rect. 21 12
278 364.62 temperature 20 720 < th dose independent rect. 21 6
290 365.53 temperature 20 270 < th dose independent rect. 23 16
298 365.96 temperature 20 720 > th dose independent rect. 21 23
313 366.49 temperature 25 720 < th dose dependent rect. 16 15
321 366.87 temperature 25 720 < th dose dependent sin 12 NA
457 372.08 temperature 20 4320 > th dose independent sin 19 NA
462 372.21 temperature 25 270 < th dose dependent sin 8 NA
517 374.18 temperature 20 720 < th dose independent rect. 23 2
524 374.44 temperature 25 720 < th dose dependent rect. 9 21
532 374.80 temperature 25 270 < th dose dependent rect. 23 21
680 378.59 temperature 20 4320 < th dose independent sin 19 NA
693 379.02 temperature 25 720 < th dose dependent no NA NA
738 379.99 wind 7 14400 > th dose independent rect. 6 1
759 380.37 temperature 25 4320 < th dose dependent rect. 17 1
774 380.70 temperature 15 720 > th dose dependent sin 12 NA
776 380.72 temperature 20 1440 > th dose independent rect. 5 2
777 380.72 temperature 25 720 < th dose dependent rect. 3 23
822 381.62 temperature 20 1440 < th dose independent rect. 5 2
837 381.82 temperature 25 270 < th dose dependent rect. 23 11
875 382.64 temperature 15 270 > th dose dependent sin 9 NA
915 383.17 temperature 25 720 < th dose dependent rect. 21 6
954 383.77 temperature 15 720 > th dose dependent rect. 17 15