BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0320400 Os10g0320400|AK072694
(324 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0320400 Similar to ATP synthase gamma chain, mitochond... 621 e-178
AK110586 172 3e-43
AK108313 161 6e-40
AK109020 157 9e-39
Os07g0513000 Similar to ATP synthase gamma chain, chloropla... 108 6e-24
>Os10g0320400 Similar to ATP synthase gamma chain, mitochondrial precursor (EC
3.6.3.14)
Length = 324
Score = 621 bits (1602), Expect = e-178, Method: Compositional matrix adjust.
Identities = 306/324 (94%), Positives = 306/324 (94%)
Query: 1 MAMAALRRDGRRVLLXXXXXXXXXXXXXXXXXXHQEIAPLGARSVSTQVVRTRMKSVRNI 60
MAMAALRRDGRRVLL HQEIAPLGARSVSTQVVRTRMKSVRNI
Sbjct: 1 MAMAALRRDGRRVLLSSTPSPAAAMAARSPAAAHQEIAPLGARSVSTQVVRTRMKSVRNI 60
Query: 61 QKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKGLCG 120
QKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKGLCG
Sbjct: 61 QKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKGLCG 120
Query: 121 GINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYT 180
GINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYT
Sbjct: 121 GINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYT 180
Query: 181 QIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYE 240
QIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYE
Sbjct: 181 QIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKVGDLDSYE 240
Query: 241 IEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTY 300
IEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTY
Sbjct: 241 IEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTY 300
Query: 301 NRTRQASITTELIEIISGASALEG 324
NRTRQASITTELIEIISGASALEG
Sbjct: 301 NRTRQASITTELIEIISGASALEG 324
>AK110586
Length = 300
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 175/290 (60%), Gaps = 23/290 (7%)
Query: 45 VSTQVVRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTE--------NSRGLWQPFTALL 96
V+ +V++ RMKSV NIQKITKAMKMVAASK+R IR E S ++ + L
Sbjct: 22 VNEKVIKQRMKSVGNIQKITKAMKMVAASKMRLDLIRLEAGKSFGLTTSHNIFANESYLQ 81
Query: 97 GDVPSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKV 155
S +VKK+++V ITSD+GLCGG+NS+ V+ K + P + + K ++GEKG
Sbjct: 82 KKQLSFNVKKSLLVPITSDRGLCGGVNSSIVREVKGI----VAPNRSAYKIFVIGEKGTT 137
Query: 156 QLIRDSKDNIEMTVSELQKNPINYTQIAVLADDILKNVE---YDALRVVFNKFHSVISFK 212
L+R D + +VSE P+N+T + LA + + E D L +++N+F S+I+ +
Sbjct: 138 ALLRPFPDCLHSSVSECLY-PMNFTIASSLAHQVCQAAEEEQCDNLVLIYNEFKSIIASQ 196
Query: 213 PTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENAC 272
IL+ + ++ + V D+ E + +K Q + + +Y+A L+NA
Sbjct: 197 VKRLEILNRKNFFQQFKY--VVRHDTEEPDRDFSK----QYYYDLYVTSQVYHALLQNAA 250
Query: 273 SELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 322
SE ARM+AM+++S+NA EM+++L LTYN+ RQA IT EL+EIISGA+AL
Sbjct: 251 SEQTARMNAMENASKNAKEMIEKLNLTYNKARQARITMELVEIISGANAL 300
>AK108313
Length = 306
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 172/296 (58%), Gaps = 24/296 (8%)
Query: 38 APLGARSVSTQVVRT---RMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLW----Q 90
APL A+S + +R R+KS+RNI+KITK MK+VA++KL Q R N + Q
Sbjct: 24 APLVAQSANYATLREIEGRLKSIRNIEKITKTMKIVASTKLTRAQ-RAMNESITYGKTSQ 82
Query: 91 PFTALLGDVPSV-DVKKNVIVAITSDKGLCGGINS-TSVKVSKALHKLTSGPEKESKYVI 148
G VP+ + KK+++V +SDKGLCGGI+S S V K L T G + +
Sbjct: 83 KTFEEAGTVPAEGEGKKSLLVICSSDKGLCGGIHSGLSRYVRKQL--TTDGLPSDIDIAV 140
Query: 149 LGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQIAVLADDI-LKNVEYDALRVVFNKFHS 207
+GEK K Q+ R + N+ ++ S + K + +AD + L N +YD++++++NKF +
Sbjct: 141 IGEKCKAQMSRSNPKNMVLSFSGVGKAVPTFADATSIADQLCLLNTQYDSIKILYNKFIN 200
Query: 208 VISFKPTMTTILSPEVMEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAA 267
S++PT+ S E + KES + S+EI+ +L +L E+ + ++ A
Sbjct: 201 ATSYEPTIIEAFSEEAI-KES-----ANFSSFEID-----EAVLPSLREYALANSLFWAL 249
Query: 268 LENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 323
E E AR +AMD++S+NAGEM+ + + +NRTRQA IT EL+EII+GA+A E
Sbjct: 250 AEGHACEQSARRNAMDNASKNAGEMITKFQILFNRTRQAVITGELVEIITGAAASE 305
>AK109020
Length = 301
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 160/280 (57%), Gaps = 22/280 (7%)
Query: 50 VRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDV----K 105
+ R+KS+RNI+KITK MK+VA++KL Q SR Q + + K
Sbjct: 37 IEDRLKSIRNIEKITKTMKIVASTKLTRAQRAMTESRNYGQTSNTVFEQAETKPTEGEGK 96
Query: 106 KNVIVAITSDKGLCGGINSTSVKVSKALHK-LTSGPEKESKYVILGEKGKVQLIRDSKDN 164
K ++V +SDKGLCGGI+S +S+A+ K L PE + I+GEK K QL R + N
Sbjct: 97 KTLVVVCSSDKGLCGGIHS---GLSRAVRKFLLEQPEAD--LAIIGEKCKAQLSRSNGKN 151
Query: 165 IEMTVSELQKNPINYTQIAVLADDILK-NVEYDALRVVFNKFHSVISFKPTMTTILSPEV 223
+ ++ + + K+ + + +AD I EY ++++++NKF + S++ T S E
Sbjct: 152 VVLSFAGVGKDVPTFADASAIADMITTLPTEYSSIKILYNKFLNAQSYEATPIEAFSEEA 211
Query: 224 MEKESESGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMD 283
+++ + ++EI+ E+L NL E+ + +Y A E E AR +AMD
Sbjct: 212 IQQSP------NFSAFEID-----DEVLGNLREYALANSLYWALAEGHACEQSARRNAMD 260
Query: 284 SSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 323
++S+NAG+M+++ + +NRTRQA IT EL+EII+GA+A E
Sbjct: 261 NASKNAGDMINKFQILFNRTRQAVITGELVEIITGAAASE 300
>Os07g0513000 Similar to ATP synthase gamma chain, chloroplast (EC 3.6.1.34)
(Fragment)
Length = 358
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 50/320 (15%)
Query: 50 VRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLG-----------D 98
+R+R+ SVRN QKIT+AMK+VAA+K+R Q +SR + +L D
Sbjct: 41 LRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDID 100
Query: 99 VPSV---DVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKESKYVI--LGEKG 153
+P VKK +V +T ++GLCG N+ +K KA ++ + +Y + +G+KG
Sbjct: 101 LPLTRIRPVKKVALVVLTGERGLCGSFNNNVLK--KAETRIEELKQLGLEYTVVSVGKKG 158
Query: 154 KVQLIRDSKDNIEMTVSELQKNPI--NYTQIAVLADDILKNVEYDALRVVFNKFHSVISF 211
IR E T+ E+ P + I L + + D + ++++KF S++
Sbjct: 159 NAYFIRRPFIPTERTL-EVNGIPTVKDSQSICDLVYSLFVSEAVDKVELLYSKFVSLVRS 217
Query: 212 KPTMTTIL--SP-----------------EVMEKESESGKVG-DLDSYEIEGG------- 244
P + T+L SP E+ ++ GK+ + + +IE
Sbjct: 218 DPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVKIETQPFSPVVQ 277
Query: 245 --ETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNR 302
+ +IL L + + A E+ SEL ARMSAM S++ NA E+ L++ YNR
Sbjct: 278 FEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNAIELRKNLSMVYNR 337
Query: 303 TRQASITTELIEIISGASAL 322
RQA IT E++EI++GA AL
Sbjct: 338 QRQAKITGEILEIVAGADAL 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,022,715
Number of extensions: 280427
Number of successful extensions: 608
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 223
Effective length of database: 11,762,187
Effective search space: 2622967701
Effective search space used: 2622967701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)