Os07g0513000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP synthase gamma chain, chloroplast (EC 3.6.1.34) (Fragment).
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Os07g0513000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP synthase gamma chain, chloroplast (EC 3.6.1.34) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.19 | 0.302 | 14.6 | -0.466 | 0.295 | -0.522 | 0.597 | -0.129 | -0.393 | 7.3 | 22.3 | 1257 | -- | -- |
| 41.24 | 0.299 | 14.6 | -0.434 | 0.297 | -0.515 | 0.6 | -- | -0.391 | 7.29 | 22.3 | 1256 | -- | -- |
| 42.14 | 0.302 | 14.6 | -0.462 | 0.295 | -0.52 | -- | -0.158 | -0.397 | 7.44 | 22.23 | 1248 | -- | -- |
| 42.2 | 0.303 | 14.6 | -0.412 | 0.295 | -0.519 | -- | -- | -0.385 | 7.44 | 22.3 | 1256 | -- | -- |
| 45.74 | 0.315 | 14.6 | -0.517 | -- | -0.489 | -- | -0.305 | -0.412 | -- | 22.25 | 846 | -- | -- |
| 51.79 | 0.337 | 14.6 | -0.608 | 0.302 | -- | 0.548 | -- | -0.56 | 7.86 | -- | -- | -- | -- |
| 52.64 | 0.34 | 14.6 | -0.593 | 0.301 | -- | -- | -- | -0.56 | 8.1 | -- | -- | -- | -- |
| 46.06 | 0.316 | 14.6 | -0.416 | -- | -0.511 | -- | -- | -0.383 | -- | 22.3 | 967 | -- | -- |
| 44.9 | 0.312 | 14.6 | -- | 0.306 | -0.711 | -- | -- | -0.311 | 7.64 | 21.42 | 2786 | -- | -- |
| 57.62 | 0.355 | 14.6 | -0.59 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 61.91 | 0.368 | 14.6 | -- | 0.298 | -- | -- | -- | -0.494 | 8.25 | -- | -- | -- | -- |
| 49.13 | 0.326 | 14.6 | -- | -- | -0.699 | -- | -- | -0.306 | -- | 21.7 | 2234 | -- | -- |
| 66.81 | 0.382 | 14.6 | -- | -- | -- | -- | -- | -0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 41.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 4 | 41.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 5 | 41.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 8 | 41.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 11 | 41.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 70 | 41.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 144 | 41.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 223 | 42.18 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 256 | 42.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 292 | 42.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 666 | 43.06 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 744 | 43.17 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 806 | 43.23 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 828 | 43.26 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 859 | 43.28 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 898 | 43.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 908 | 43.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |