BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0513000 Os07g0513000|AK064835
(358 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G04640.1 | chr4:2350761-2351882 REVERSE LENGTH=374 497 e-141
AT1G15700.1 | chr1:5402629-5403789 REVERSE LENGTH=387 436 e-123
AT2G33040.1 | chr2:14018978-14021047 REVERSE LENGTH=326 91 7e-19
>AT4G04640.1 | chr4:2350761-2351882 REVERSE LENGTH=374
Length = 373
Score = 497 bits (1280), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/323 (72%), Positives = 280/323 (86%)
Query: 34 VRCSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQE 93
++ SLRELR RIDSV+NTQKITEAMKLVAAAKVRRAQEAVV+ RPFSE LVEVLYN+N++
Sbjct: 49 LQASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQ 108
Query: 94 IQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVS 153
+QT+D+D+PLT++RPVKKVALVV+TG+RGLCG FNN ++KKAE RI+ELK LGLEYTV+S
Sbjct: 109 LQTDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVIS 168
Query: 154 VGKKGNAYFIRRPFIPTERTLEVNGIPTVKDSQSICDLVYSLFVSEAVDKVELLYSKFVS 213
VGKKGN+YF+RRP+IP ++ LE +PT K++Q++ D V+SLF+SE VDKVELLY+KFVS
Sbjct: 169 VGKKGNSYFLRRPYIPVDKYLEAGTLPTAKEAQAVADDVFSLFISEEVDKVELLYTKFVS 228
Query: 214 LVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVKIETQPFS 273
LV+S+P+I TLLP+SPKGEICDING CVDA EDE FRLTTKEGKLTVERE + T FS
Sbjct: 229 LVKSEPVIHTLLPLSPKGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETFRTPTADFS 288
Query: 274 PVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNAIELRKNLSM 333
P++QFEQDPVQILDALLPLYLNSQI MSAMSSA+DNA +L+K+LSM
Sbjct: 289 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSM 348
Query: 334 VYNRQRQAKITGEILEIVAGADA 356
VYNR+RQAKITGEILEIVAGA+A
Sbjct: 349 VYNRKRQAKITGEILEIVAGANA 371
>AT1G15700.1 | chr1:5402629-5403789 REVERSE LENGTH=387
Length = 386
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/325 (64%), Positives = 262/325 (80%), Gaps = 1/325 (0%)
Query: 34 VRCSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQE 93
+R +RELR RIDSV+NTQKITEAM+LVAAA+VRRAQ+AV+ RPF+E LVE+LY++NQ
Sbjct: 59 IRAGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQS 118
Query: 94 IQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVS 153
Q EDID PL+ +RPVK+VALVV+TG++GLCG FNN V KKA R++ELKQ G++ V+S
Sbjct: 119 AQLEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVIS 178
Query: 154 VGKKGNAYFIRRPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212
VGKKGNAYF RR ++ +E G+ PT K++Q I D V+SLFVSE VDKVEL+Y+KFV
Sbjct: 179 VGKKGNAYFSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFV 238
Query: 213 SLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVKIETQPF 272
SLV+SDP+I TLLP+S KGE CD+ G CVDA EDE+FRLT+K+GKL VER K+++E
Sbjct: 239 SLVKSDPVIHTLLPLSMKGESCDVKGECVDAIEDEMFRLTSKDGKLAVERTKLEVEKPEI 298
Query: 273 SPVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNAIELRKNLS 332
SP++QFEQDPVQILDA++PLYLNSQI M+AMS+ATDNA+EL+KNL+
Sbjct: 299 SPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNLT 358
Query: 333 MVYNRQRQAKITGEILEIVAGADAL 357
M YNR RQAKITGE+LEIVAGA+AL
Sbjct: 359 MAYNRARQAKITGELLEIVAGAEAL 383
>AT2G33040.1 | chr2:14018978-14021047 REVERSE LENGTH=326
Length = 325
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 152/331 (45%), Gaps = 47/331 (14%)
Query: 29 GRLQVVRCSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLY 88
G L V S + +R+R+ SV+N QKIT+AMK+VAA+K+R Q +SR + +L
Sbjct: 36 GLLGVRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLG 95
Query: 89 NMNQEIQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLE 148
+ ID VKK +V L+ ++GLCG N+ V+K + + E
Sbjct: 96 D------NPSID--------VKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKE 141
Query: 149 YTVVSVGKKGNAYFIR--RPFIPTERTLEVNGIPTVKDSQSICDLVYSLFVSEAVDKVEL 206
V VG+K A R + I T E+N P + + L + + D + +
Sbjct: 142 VQFVIVGEKAKAIMFRDSKNDIVLSVT-ELNKNPL--NYAQVSVLADDILKNVEFDALRI 198
Query: 207 LYSKFVSLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVK 266
+Y+KF S+V P + T+L SP EI + E E+ GKL E + +
Sbjct: 199 VYNKFHSVVAFLPTVSTVL--SP--EIIE--------KESEI------GGKLG-ELDSYE 239
Query: 267 IETQPFSPVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNAIE 326
IE + +IL L + + MSAM S++ NA E
Sbjct: 240 IEGG---------ETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGE 290
Query: 327 LRKNLSMVYNRQRQAKITGEILEIVAGADAL 357
+ L++ YNR RQA IT E++EI++GA AL
Sbjct: 291 MLDRLTLTYNRTRQASITTELIEIISGASAL 321
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,827,863
Number of extensions: 213604
Number of successful extensions: 637
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)