BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0513000 Os07g0513000|AK064835
         (358 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0513000  Similar to ATP synthase gamma chain, chloropla...   642   0.0  
Os10g0320400  Similar to ATP synthase gamma chain, mitochond...    92   7e-19
AK108313                                                           88   1e-17
AK109020                                                           82   5e-16

>Os07g0513000 Similar to ATP synthase gamma chain, chloroplast (EC 3.6.1.34)
           (Fragment)
          Length = 358

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/334 (95%), Positives = 319/334 (95%)

Query: 25  CGSSGRLQVVRCSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALV 84
           CGSSGRLQVVRCSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALV
Sbjct: 25  CGSSGRLQVVRCSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALV 84

Query: 85  EVLYNMNQEIQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQ 144
           EVLYNMNQEIQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQ
Sbjct: 85  EVLYNMNQEIQTEDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQ 144

Query: 145 LGLEYTVVSVGKKGNAYFIRRPFIPTERTLEVNGIPTVKDSQSICDLVYSLFVSEAVDKV 204
           LGLEYTVVSVGKKGNAYFIRRPFIPTERTLEVNGIPTVKDSQSICDLVYSLFVSEAVDKV
Sbjct: 145 LGLEYTVVSVGKKGNAYFIRRPFIPTERTLEVNGIPTVKDSQSICDLVYSLFVSEAVDKV 204

Query: 205 ELLYSKFVSLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREK 264
           ELLYSKFVSLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREK
Sbjct: 205 ELLYSKFVSLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREK 264

Query: 265 VKIETQPFSPVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNA 324
           VKIETQPFSPVVQFEQDPVQILDALLPLYLNSQI               MSAMSSATDNA
Sbjct: 265 VKIETQPFSPVVQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSATDNA 324

Query: 325 IELRKNLSMVYNRQRQAKITGEILEIVAGADALA 358
           IELRKNLSMVYNRQRQAKITGEILEIVAGADALA
Sbjct: 325 IELRKNLSMVYNRQRQAKITGEILEIVAGADALA 358



>Os10g0320400 Similar to ATP synthase gamma chain, mitochondrial precursor (EC
           3.6.3.14)
          Length = 324

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 145/326 (44%), Gaps = 62/326 (19%)

Query: 41  LRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQTEDID 100
           +R+R+ SVRN QKIT+AMK+VAA+K+R  Q    +SR   +    +L            D
Sbjct: 50  VRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLG-----------D 98

Query: 101 LPLTRIRPVKKVALVVLTGERGLCGSFNNNVLK--KAETRIEELKQLGLEYTVVSVGKKG 158
           +P      VKK  +V +T ++GLCG  N+  +K  KA  ++    +   +Y +  +G+KG
Sbjct: 99  VPSV---DVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKESKYVI--LGEKG 153

Query: 159 NAYFIRRPFIPTERTL-EVNGIPTVKDSQSICDLVYSLFVSEAVDKVELLYSKFVSLVRS 217
               IR      E T+ E+   P   +   I  L   +  +   D + ++++KF S++  
Sbjct: 154 KVQLIRDSKDNIEMTVSELQKNPI--NYTQIAVLADDILKNVEYDALRVVFNKFHSVISF 211

Query: 218 DPIIQTLLP------MSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVKIETQP 271
            P + T+L        S  G++ D++   ++  E       TK                 
Sbjct: 212 KPTMTTILSPEVMEKESESGKVGDLDSYEIEGGE-------TKS---------------- 248

Query: 272 FSPVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNAIELRKNL 331
                       +IL  L     +  +               MSAM S++ NA E+   L
Sbjct: 249 ------------EILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRL 296

Query: 332 SMVYNRQRQAKITGEILEIVAGADAL 357
           ++ YNR RQA IT E++EI++GA AL
Sbjct: 297 TLTYNRTRQASITTELIEIISGASAL 322



>AK108313 
          Length = 306

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 63/326 (19%)

Query: 37  SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
           +LRE+  R+ S+RN +KIT+ MK+VA+ K+ RAQ A+  S  + +         +Q+   
Sbjct: 35  TLREIEGRLKSIRNIEKITKTMKIVASTKLTRAQRAMNESITYGK--------TSQKTFE 86

Query: 97  EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGL--EYTVVSV 154
           E   +P       KK  LV+ + ++GLCG  ++ + +      ++L   GL  +  +  +
Sbjct: 87  EAGTVPAE--GEGKKSLLVICSSDKGLCGGIHSGLSRYVR---KQLTTDGLPSDIDIAVI 141

Query: 155 GKKGNAYFIRRPFIPTERTLEVNG----IPTVKDSQSICDLVYSLFVSEAVDKVELLYSK 210
           G+K  A   R    P    L  +G    +PT  D+ SI D +    ++   D +++LY+K
Sbjct: 142 GEKCKAQMSRSN--PKNMVLSFSGVGKAVPTFADATSIADQL--CLLNTQYDSIKILYNK 197

Query: 211 FVSLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVKIETQ 270
           F++    +P I                   ++A  +E  +                 E+ 
Sbjct: 198 FINATSYEPTI-------------------IEAFSEEAIK-----------------ESA 221

Query: 271 PFSPVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNAIELRKN 330
            FS    FE D   +L +L    L + +                +AM +A+ NA E+   
Sbjct: 222 NFS---SFEIDEA-VLPSLREYALANSLFWALAEGHACEQSARRNAMDNASKNAGEMITK 277

Query: 331 LSMVYNRQRQAKITGEILEIVAGADA 356
             +++NR RQA ITGE++EI+ GA A
Sbjct: 278 FQILFNRTRQAVITGELVEIITGAAA 303



>AK109020 
          Length = 301

 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 138/327 (42%), Gaps = 66/327 (20%)

Query: 36  CSLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQ 95
            +LRE+  R+ S+RN +KIT+ MK+VA+ K+ RAQ A+  SR +               Q
Sbjct: 32  ATLREIEDRLKSIRNIEKITKTMKIVASTKLTRAQRAMTESRNYG--------------Q 77

Query: 96  TEDIDLPLTRIRPV----KKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTV 151
           T +        +P     KK  +VV + ++GLCG  ++ + +     + E  +  L    
Sbjct: 78  TSNTVFEQAETKPTEGEGKKTLVVVCSSDKGLCGGIHSGLSRAVRKFLLEQPEADLAI-- 135

Query: 152 VSVGKKGNAYFIRRPFIPTERTLEVNG--IPTVKDSQSICDLVYSLFVSEAVDKVELLYS 209
             +G+K  A   R        +    G  +PT  D+ +I D++ +L        +++LY+
Sbjct: 136 --IGEKCKAQLSRSNGKNVVLSFAGVGKDVPTFADASAIADMITTLPTE--YSSIKILYN 191

Query: 210 KFVSLVRSDPIIQTLLPMSPKGEICDINGVCVDATEDELFRLTTKEGKLTVEREKVKIET 269
           KF                        +N    +AT  E F             E+   ++
Sbjct: 192 KF------------------------LNAQSYEATPIEAF------------SEEAIQQS 215

Query: 270 QPFSPVVQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXXMSAMSSATDNAIELRK 329
             FS    FE D  ++L  L    L + +                +AM +A+ NA ++  
Sbjct: 216 PNFSA---FEIDD-EVLGNLREYALANSLYWALAEGHACEQSARRNAMDNASKNAGDMIN 271

Query: 330 NLSMVYNRQRQAKITGEILEIVAGADA 356
              +++NR RQA ITGE++EI+ GA A
Sbjct: 272 KFQILFNRTRQAVITGELVEIITGAAA 298



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,504,582
Number of extensions: 290732
Number of successful extensions: 831
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)