Os10g0320400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14).
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Os10g0320400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.2 | 0.195 | 12.4 | -0.0696 | 0.282 | -0.437 | -0.0395 | -0.291 | 0.0225 | 1.74 | 21.8 | 928 | -- | -- |
| 17.42 | 0.194 | 12.4 | 0.0167 | 0.282 | -0.43 | -0.109 | -- | 0.0418 | 1.77 | 21.9 | 957 | -- | -- |
| 17.18 | 0.193 | 12.4 | -0.0695 | 0.284 | -0.438 | -- | -0.307 | 0.0216 | 1.83 | 21.8 | 967 | -- | -- |
| 17.46 | 0.195 | 12.4 | 0.0202 | 0.282 | -0.43 | -- | -- | 0.0429 | 1.83 | 21.8 | 959 | -- | -- |
| 20.99 | 0.213 | 12.4 | -0.0209 | -- | -0.462 | -- | -0.311 | 0.0268 | -- | 21.6 | 1863 | -- | -- |
| 24.29 | 0.231 | 12.4 | -0.141 | 0.231 | -- | -0.0527 | -- | -0.0906 | 2.59 | -- | -- | -- | -- |
| 24.29 | 0.231 | 12.4 | -0.14 | 0.231 | -- | -- | -- | -0.0903 | 2.63 | -- | -- | -- | -- |
| 20.51 | 0.211 | 12.4 | -0.0463 | -- | -0.281 | -- | -- | 0.0353 | -- | 24.4 | 170 | -- | -- |
| 17.47 | 0.195 | 12.4 | -- | 0.282 | -0.425 | -- | -- | 0.0399 | 1.83 | 21.85 | 956 | -- | -- |
| 27.4 | 0.245 | 12.4 | -0.13 | -- | -- | -- | -- | -0.0845 | -- | -- | -- | -- | -- |
| 24.81 | 0.233 | 12.4 | -- | 0.228 | -- | -- | -- | -0.0748 | 2.62 | -- | -- | -- | -- |
| 20.49 | 0.211 | 12.3 | -- | -- | -0.288 | -- | -- | 0.0801 | -- | 24.4 | 161 | -- | -- |
| 27.85 | 0.246 | 12.4 | -- | -- | -- | -- | -- | -0.0701 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 2 | 16.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 4 | 16.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 13 | 17.11 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 19 | 17.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 34 | 17.28 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 54 | 17.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 15 |
| 55 | 17.44 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 108 | 17.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 110 | 17.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 145 | 17.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 181 | 17.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 215 | 17.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 216 | 17.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 269 | 17.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 285 | 17.90 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 294 | 17.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 295 | 17.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 306 | 17.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 354 | 17.98 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 356 | 17.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 393 | 18.01 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 414 | 18.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 418 | 18.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 448 | 18.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 465 | 18.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 492 | 18.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 502 | 18.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 528 | 18.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 530 | 18.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 617 | 18.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 672 | 18.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 695 | 18.24 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 767 | 18.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 942 | 18.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |