BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0320400 Os10g0320400|AK072694
(324 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33040.1 | chr2:14018978-14021047 REVERSE LENGTH=326 495 e-140
AT4G04640.1 | chr4:2350761-2351882 REVERSE LENGTH=374 120 8e-28
AT1G15700.1 | chr1:5402629-5403789 REVERSE LENGTH=387 112 3e-25
>AT2G33040.1 | chr2:14018978-14021047 REVERSE LENGTH=326
Length = 325
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/325 (73%), Positives = 277/325 (85%), Gaps = 3/325 (0%)
Query: 1 MAMAALRRDGRRVLLXXXXXXXXXXXXXXXXXXHQEIAPLGARSVSTQVVRTRMKSVRNI 60
MAMA RR+GRR+L QE LG RS+STQVVR RMKSV+NI
Sbjct: 1 MAMAVFRREGRRLL--PSIAARPIAAIRSPLSSDQEEGLLGVRSISTQVVRNRMKSVKNI 58
Query: 61 QKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDVPSVDVKKNVIVAITSDKGLCG 120
QKITKAMKMVAASKLRAVQ R ENSRGLWQPFTALLGD PS+DVKK+V+V ++SDKGLCG
Sbjct: 59 QKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKSVVVTLSSDKGLCG 118
Query: 121 GINSTSVKVSKALHKLTSGPEKESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYT 180
GINST VKVS+AL+KL +GPEKE ++VI+GEK K + RDSK++I ++V+EL KNP+NY
Sbjct: 119 GINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSVTELNKNPLNYA 178
Query: 181 QIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESE-SGKVGDLDSY 239
Q++VLADDILKNVE+DALR+V+NKFHSV++F PT++T+LSPE++EKESE GK+G+LDSY
Sbjct: 179 QVSVLADDILKNVEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIEKESEIGGKLGELDSY 238
Query: 240 EIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRLTLT 299
EIEGGETK EILQNL EFQFSCVM+NA LENACSE+GARMSAMDSSSRNAGEMLDRLTLT
Sbjct: 239 EIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEMGARMSAMDSSSRNAGEMLDRLTLT 298
Query: 300 YNRTRQASITTELIEIISGASALEG 324
YNRTRQASITTELIEIISGASALE
Sbjct: 299 YNRTRQASITTELIEIISGASALEA 323
>AT4G04640.1 | chr4:2350761-2351882 REVERSE LENGTH=374
Length = 373
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 160/332 (48%), Gaps = 53/332 (15%)
Query: 37 IAPLGARSVSTQVVRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALL 96
++PL A S + +R R+ SV+N QKIT+AMK+VAA+K+R Q N R + +L
Sbjct: 46 VSPLQA---SLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVL 102
Query: 97 G-----------DVPSV---DVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEK 142
DVP VKK +V +T D+GLCGG N+ +K ++A K G
Sbjct: 103 YNINEQLQTDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGL 162
Query: 143 ESKYVILGEKGKVQLIRDSKDNIEMTVSELQKNPINYTQIAVLADDILK---NVEYDALR 199
E + +G+KG +R ++ + E P AV ADD+ + E D +
Sbjct: 163 EYTVISVGKKGNSYFLRRPYIPVDKYL-EAGTLPTAKEAQAV-ADDVFSLFISEEVDKVE 220
Query: 200 VVFNKFHSVISFKPTMTTIL--SPE----------------------------VMEKESE 229
+++ KF S++ +P + T+L SP+ +E+E+
Sbjct: 221 LLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETF 280
Query: 230 SGKVGDLDSYEIEGGETKSEILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNA 289
D ++ + +IL L + + A E+ SEL ARMSAM S+S NA
Sbjct: 281 RTPTADFSPI-LQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNA 339
Query: 290 GEMLDRLTLTYNRTRQASITTELIEIISGASA 321
++ L++ YNR RQA IT E++EI++GA+A
Sbjct: 340 SDLKKSLSMVYNRKRQAKITGEILEIVAGANA 371
>AT1G15700.1 | chr1:5402629-5403789 REVERSE LENGTH=387
Length = 386
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 159/326 (48%), Gaps = 61/326 (18%)
Query: 50 VRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQPFTALLGDV---------- 99
+R R+ SV+N QKIT+AM++VAA+++R R +++ +PFT L ++
Sbjct: 66 LRERIDSVKNTQKITEAMRLVAAARVR----RAQDAVIKGRPFTETLVEILYSINQSAQL 121
Query: 100 PSVD--------VKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKESKYVIL-- 149
+D VK+ +V +T DKGLCGG N+ K KA ++ ++ V++
Sbjct: 122 EDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTK--KATLRVQELKQRGIDCVVISV 179
Query: 150 GEKGKVQLIRDSKDNIEMTVSELQKNPINYTQIAVLADDILK---NVEYDALRVVFNKFH 206
G+KG R + +++ + P + V+ADD+ + E D + +V+ KF
Sbjct: 180 GKKGNAYFSRRDEFDVDKCIEGGGVFPTT-KEAQVIADDVFSLFVSEEVDKVELVYTKFV 238
Query: 207 SVISFKPTMTTILSPEVMEKES--------------------ESGKVG-DLDSYEIEGGE 245
S++ P + T+L P M+ ES + GK+ + E+E E
Sbjct: 239 SLVKSDPVIHTLL-PLSMKGESCDVKGECVDAIEDEMFRLTSKDGKLAVERTKLEVEKPE 297
Query: 246 TKS---------EILQNLTEFQFSCVMYNAALENACSELGARMSAMDSSSRNAGEMLDRL 296
+IL + + + A E+ SEL +RM+AM +++ NA E+ L
Sbjct: 298 ISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNL 357
Query: 297 TLTYNRTRQASITTELIEIISGASAL 322
T+ YNR RQA IT EL+EI++GA AL
Sbjct: 358 TMAYNRARQAKITGELLEIVAGAEAL 383
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,399,256
Number of extensions: 201800
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)