BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0318900 Os10g0318900|AK111448
         (209 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0318900  Similar to ER6 protein (Fragment)                   306   7e-84
Os02g0760500  Similar to ER6 protein (Fragment)                    80   8e-16

>Os10g0318900 Similar to ER6 protein (Fragment)
          Length = 209

 Score =  306 bits (784), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 154/167 (92%), Positives = 154/167 (92%)

Query: 43  CAVPHPRPDRLLQLHHAADPHGVQRTRPRCXXXXXXXXXXXXXRRQHERRGGQWPPADNL 102
           CAVPHPRPDRLLQLHHAADPHGVQRTRPRC             RRQHERRGGQWPPADNL
Sbjct: 43  CAVPHPRPDRLLQLHHAADPHGVQRTRPRCGGGSASAADADASRRQHERRGGQWPPADNL 102

Query: 103 RLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGPSKQSLALVFAEIRTDTWSCGCELWFLR 162
           RLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGPSKQSLALVFAEIRTDTWSCGCELWFLR
Sbjct: 103 RLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGPSKQSLALVFAEIRTDTWSCGCELWFLR 162

Query: 163 IFSVELMASWMCRAADQARSLASLVASINSPRRRRCAGPGITSSKHY 209
           IFSVELMASWMCRAADQARSLASLVASINSPRRRRCAGPGITSSKHY
Sbjct: 163 IFSVELMASWMCRAADQARSLASLVASINSPRRRRCAGPGITSSKHY 209



>Os02g0760500 Similar to ER6 protein (Fragment)
          Length = 162

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 38/38 (100%)

Query: 100 DNLRLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGPSK 137
           DNLRLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGPS+
Sbjct: 28  DNLRLRPDGALVVLHVQPPPSIAAGLNPGPIPFGGPSE 65



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.138    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,964,972
Number of extensions: 298455
Number of successful extensions: 1165
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)