BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0208600 Os10g0208600|AK068630
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0208600  Conserved hypothetical protein                      343   6e-95
Os10g0206500  Conserved hypothetical protein                      188   2e-48

>Os10g0208600 Conserved hypothetical protein
          Length = 197

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 171/197 (86%), Positives = 171/197 (86%)

Query: 1   MPRLLPGTGRXXXXXXXXXXXXXXXXXXXXXXXXXXVMPMEAYFSPAELVRIAGYGEELV 60
           MPRLLPGTGR                          VMPMEAYFSPAELVRIAGYGEELV
Sbjct: 1   MPRLLPGTGRASSLSSSLLLLLLLGAAMAAAPEAAAVMPMEAYFSPAELVRIAGYGEELV 60

Query: 61  STVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACETGGIKTMANSVFTVTDENGNFTI 120
           STVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACETGGIKTMANSVFTVTDENGNFTI
Sbjct: 61  STVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACETGGIKTMANSVFTVTDENGNFTI 120

Query: 121 ELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSYYHGIQLSSSEDGIRSYTTGVIRL 180
           ELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSYYHGIQLSSSEDGIRSYTTGVIRL
Sbjct: 121 ELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSYYHGIQLSSSEDGIRSYTTGVIRL 180

Query: 181 QHHDTKSDMSMHHVGTE 197
           QHHDTKSDMSMHHVGTE
Sbjct: 181 QHHDTKSDMSMHHVGTE 197



>Os10g0206500 Conserved hypothetical protein
          Length = 188

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 114/154 (74%), Gaps = 5/154 (3%)

Query: 38  MPMEAYFSPAELVRIAGYGEELVSTVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACE 97
           MPME YFSP EL RIAGYGEE VSTV+VSG+V C+L L P GSDLL+ ELPGA V VACE
Sbjct: 24  MPMELYFSPGELARIAGYGEEPVSTVVVSGQVACELCLCP-GSDLLTFELPGAKVEVACE 82

Query: 98  TGGIKTMANSVFTVTDENGNFTIELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSY 157
           T G  T ANSVFT TDE GNFT  LPSRLHATP+LE AC VKVLQLP D AC  R  P+ 
Sbjct: 83  TEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRPAA 142

Query: 158 YHGIQ----LSSSEDGIRSYTTGVIRLQHHDTKS 187
            + I+    LSSS DG R+YT GVIRLQH  T S
Sbjct: 143 SYRIRPSSSLSSSADGFRAYTAGVIRLQHGGTPS 176



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,399,623
Number of extensions: 249694
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)