Os10g0208600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0208600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.68 | 0.607 | 5.58 | 0.213 | 1.23 | -1.4 | 0.735 | 0.368 | 0.127 | 5.03 | 77.23 | 806 | -- | -- |
| 166.13 | 0.6 | 5.56 | 0.144 | 1.4 | -1.46 | 0.744 | -- | 0.188 | 5.05 | 78.99 | 904 | -- | -- |
| 166.6 | 0.601 | 5.57 | 0.187 | 1.44 | -1.48 | -- | 0.546 | 0.146 | 5.04 | 78.29 | 914 | -- | -- |
| 166.9 | 0.602 | 5.58 | 0.174 | 1.43 | -1.48 | -- | -- | 0.137 | 5.06 | 78 | 912 | -- | -- |
| 193.63 | 0.648 | 5.61 | 0.147 | -- | -1.69 | -- | -0.202 | 0.195 | -- | 80 | 533 | -- | -- |
| 202.42 | 0.667 | 5.57 | 0.0523 | 1.75 | -- | 0.586 | -- | 0.0938 | 6.38 | -- | -- | -- | -- |
| 203.27 | 0.668 | 5.57 | 0.0601 | 1.75 | -- | -- | -- | 0.092 | 6.4 | -- | -- | -- | -- |
| 193.56 | 0.648 | 5.59 | 0.134 | -- | -1.76 | -- | -- | 0.178 | -- | 79.89 | 535 | -- | -- |
| 167.62 | 0.603 | 5.58 | -- | 1.44 | -1.45 | -- | -- | 0.121 | 5.06 | 78.1 | 913 | -- | -- |
| 363.18 | 0.89 | 5.6 | 0.105 | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
| 203.36 | 0.667 | 5.57 | -- | 1.76 | -- | -- | -- | 0.0854 | 6.4 | -- | -- | -- | -- |
| 194.04 | 0.649 | 5.6 | -- | -- | -1.76 | -- | -- | 0.163 | -- | 79.53 | 535 | -- | -- |
| 363.48 | 0.89 | 5.61 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.75 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 19 |
| 5 | 163.87 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 21 |
| 7 | 164.07 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 20 |
| 22 | 165.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 24 | 165.45 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 15 |
| 32 | 165.74 | humidity | 90 | 270 | > th | dose dependent | sin | 18 | NA |
| 34 | 165.94 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 23 |
| 35 | 166.03 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 39 | 166.15 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 40 | 166.16 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 55 | 166.58 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 59 | 166.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 74 | 166.89 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 21 |
| 77 | 166.96 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 79 | 166.97 | humidity | 70 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 88 | 167.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 114 | 167.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 115 | 167.67 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 117 | 167.69 | humidity | 70 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 125 | 167.75 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 14 |
| 137 | 167.90 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 12 |
| 141 | 167.94 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 22 |
| 150 | 168.06 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 159 | 168.19 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 16 |
| 161 | 168.22 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 22 |
| 168 | 168.25 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 5 |
| 169 | 168.26 | humidity | 80 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 185 | 168.39 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 20 |
| 190 | 168.41 | humidity | 80 | 720 | < th | dose independent | sin | 22 | NA |
| 194 | 168.42 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 195 | 168.42 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 16 |
| 220 | 168.56 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 3 |
| 230 | 168.64 | humidity | 80 | 720 | < th | dose independent | rect. | 14 | 5 |
| 274 | 168.88 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 23 |
| 278 | 168.90 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 285 | 168.97 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 290 | 168.99 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 294 | 169.00 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 23 |
| 295 | 169.01 | humidity | 70 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 303 | 169.10 | humidity | 80 | 720 | > th | dose independent | sin | 22 | NA |
| 314 | 169.16 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 10 |
| 323 | 169.20 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 23 |
| 394 | 169.58 | humidity | 80 | 720 | > th | dose dependent | sin | 21 | NA |
| 399 | 169.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 404 | 169.60 | humidity | 70 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 422 | 169.70 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 12 |
| 453 | 169.84 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 23 |
| 470 | 169.93 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 485 | 170.01 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 549 | 170.30 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 4 |
| 556 | 170.34 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 10 |
| 593 | 170.50 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 615 | 170.61 | humidity | 90 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 658 | 170.78 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 7 |
| 770 | 171.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 773 | 171.23 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 789 | 171.28 | humidity | 90 | 270 | < th | dose independent | rect. | 11 | 15 |
| 808 | 171.33 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 809 | 171.33 | humidity | 80 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 819 | 171.37 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 835 | 171.45 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 844 | 171.48 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 849 | 171.49 | humidity | 90 | 270 | > th | dose independent | sin | 16 | NA |
| 888 | 171.60 | humidity | 90 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 896 | 171.63 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 18 |
| 907 | 171.65 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 14 |
| 919 | 171.68 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 947 | 171.76 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 14 |
| 984 | 171.84 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |