BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0208600 Os10g0208600|AK068630
(197 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47635.1 | chr5:19307281-19307849 REVERSE LENGTH=165 110 7e-25
AT2G40113.1 | chr2:16750254-16750906 FORWARD LENGTH=170 92 2e-19
AT4G17215.1 | chr4:9655884-9656425 FORWARD LENGTH=151 80 8e-16
>AT5G47635.1 | chr5:19307281-19307849 REVERSE LENGTH=165
Length = 164
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 6/144 (4%)
Query: 44 FSPAELVRIAGYGEELVSTVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACETGGIKT 103
++ E+V +AGYGE+ +S+V+++G ++C S RP L SI +PGATV + C TG K
Sbjct: 27 WTRTEMVEMAGYGEQKLSSVVITGSLLCDTS-RP---HLHSIPIPGATVAIKCHTGS-KR 81
Query: 104 MANSVFTVTDENGNFTIELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSYYHGIQL 163
+ + VTDE G F I+LPS+LHA P+LE C +K + +P C+ S + + I+L
Sbjct: 82 RSKWIKAVTDELGEFEIDLPSQLHAIPHLENTCFIKPVYVPRPYRCY-NTSTNIHKPIKL 140
Query: 164 SSSEDGIRSYTTGVIRLQHHDTKS 187
SS +G R YT+G IRLQ H ++S
Sbjct: 141 VSSTNGFRVYTSGKIRLQGHSSRS 164
>AT2G40113.1 | chr2:16750254-16750906 FORWARD LENGTH=170
Length = 169
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 15/140 (10%)
Query: 44 FSPAELVRIAGYGEELVSTVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACETGGIKT 103
+S E+ +AGYGE +S+V+++G ++C + + GATV + C TG +K
Sbjct: 28 WSIREMSDMAGYGEHKLSSVVITGSLLC------------NTPVSGATVAIKCHTG-LKQ 74
Query: 104 MANSVFTVTDENGNFTIELPSRLHATPNLEKACSVKVLQLPLDC-ACWPRRSPSYYH-GI 161
+ + +VT++ G F I LPS LHA P LEKAC VK + +P C+ S S H I
Sbjct: 75 RSKWIKSVTNDFGEFVIHLPSHLHAIPQLEKACFVKPIHVPKHYHRCYHTFSKSNIHKDI 134
Query: 162 QLSSSEDGIRSYTTGVIRLQ 181
+L SS +G R YT+G I+L
Sbjct: 135 KLVSSRNGFRVYTSGTIKLH 154
>AT4G17215.1 | chr4:9655884-9656425 FORWARD LENGTH=151
Length = 150
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 15/138 (10%)
Query: 44 FSPAELVRIAGYGEELVSTVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACETGGIKT 103
+S E+V +AGYGE+ +S+V+++ + S + GAT+G C TG +
Sbjct: 24 WSRDEMVEMAGYGEQKLSSVLLTASL----------LSSSSSPIHGATIGFKCHTGH-RR 72
Query: 104 MANSVFTVTDENGNFTIELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSYYHGIQL 163
+ + VT+E G F I+LPS LHA P+L+KAC +K L +P C S + GIQL
Sbjct: 73 RSKWIKAVTNELGQFVIDLPSHLHAIPDLDKACIIKTLSVPKPYRC----SSKIHRGIQL 128
Query: 164 SSSEDGIRSYTTGVIRLQ 181
SS +G R YT G I LQ
Sbjct: 129 LSSSNGSRVYTAGNITLQ 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,913,422
Number of extensions: 151231
Number of successful extensions: 311
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 3
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)