BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0208500 Os10g0208500|AK065698
         (45 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0208500  Conserved hypothetical protein                       91   2e-19
Os07g0106700  Similar to Aminotransferase-like protein             82   9e-17
Os12g0584700  Hypothetical protein                                 82   9e-17
Os08g0302700                                                       77   3e-15

>Os10g0208500 Conserved hypothetical protein
          Length = 45

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  SECGSILGLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPNVSI 45
          SECGSILGLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPNVSI
Sbjct: 1  SECGSILGLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPNVSI 45



>Os07g0106700 Similar to Aminotransferase-like protein
          Length = 99

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 40/44 (90%)

Query: 1  SECGSILGLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPNVS 44
          SECG +LGLVPQSTACGM TGPLYYF FRCCSLIVVGLPGPN+ 
Sbjct: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQ 44



>Os12g0584700 Hypothetical protein
          Length = 187

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 41/45 (91%)

Query: 1  SECGSILGLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPNVSI 45
          SECG +LGLVPQSTACGM TGPLYYF FRCCSLIVVGLPGPN++ 
Sbjct: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNINT 45



>Os08g0302700 
          Length = 155

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/35 (91%), Positives = 32/35 (91%)

Query: 8  GLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPN 42
          GLVPQSTACGM  GPLYYF FRCCSLIVVGLPGPN
Sbjct: 24 GLVPQSTACGMLIGPLYYFVFRCCSLIVVGLPGPN 58



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.143    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,742,037
Number of extensions: 44263
Number of successful extensions: 103
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 4
Length of query: 45
Length of database: 17,035,801
Length adjustment: 19
Effective length of query: 26
Effective length of database: 16,043,735
Effective search space: 417137110
Effective search space used: 417137110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)