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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0106700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aminotransferase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0542) R2 : 0.289
β1 : -1.48 (0.212) R2dD : 0.0913 R2D : 0.137
β2 : 0.586 (0.137) R2dC : 0.0289 R2C : 0.0263
β3 : 3.03 (0.422) R2dE : 0.0957 R2E : 0.168
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.319 (0.118) R2dN8 : 0.0162 R2N8 : 0.0104
σ : 1
deviance : 465.11
__
_____
C
peak time of C : 7.92
E
wheather : temperature
threshold : 19.16
memory length : 1103
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
454.27 1 3.8 -1.22 0.589 1.24 0.0586 -4.62 -0.248 8.15 20.4 1103 -- --
465.15 1 3.87 -1.47 0.588 3 -0.211 -- -0.333 8.07 19.18 1113 -- --
454.24 0.993 3.8 -1.21 0.586 1.24 -- -4.57 -0.246 8.16 20.45 1093 -- --
465.11 1 3.87 -1.48 0.586 3.03 -- -- -0.319 7.92 19.16 1103 -- --
472.62 1.01 3.81 -1.2 -- 1.4 -- -4.24 -0.231 -- 20.53 1051 -- --
515.94 1.06 3.91 -2.01 0.607 -- -0.517 -- -0.522 9.16 -- -- -- --
516.63 1.06 3.91 -2.03 0.619 -- -- -- -0.524 8.75 -- -- -- --
483.32 1.02 3.88 -1.45 -- 2.99 -- -- -0.296 -- 19.35 1055 -- --
491.74 1.03 3.85 -- 0.673 3.48 -- -- -0.0718 8.21 18.68 2590 -- --
538.35 1.08 3.93 -2.03 -- -- -- -- -0.519 -- -- -- -- --
625.42 1.17 3.86 -- 0.615 -- -- -- -0.298 9 -- -- -- --
511.33 1.05 3.82 -- -- 3.57 -- -- -0.0403 -- 18.65 2501 -- --
647.14 1.19 3.88 -- -- -- -- -- -0.294 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 442.87 radiation 20 14400 < th dose independent rect. 5 1
2 443.09 humidity 50 14400 > th dose independent rect. 18 12
3 449.33 humidity 80 43200 < th dose dependent rect. 23 1
6 450.11 temperature 15 14400 < th dose independent rect. 6 18
9 450.14 temperature 15 14400 < th dose independent sin 22 NA
10 450.18 temperature 15 14400 < th dose independent rect. 7 15
14 450.29 temperature 15 14400 > th dose independent rect. 7 16
15 450.30 temperature 15 14400 > th dose independent rect. 8 14
21 450.34 temperature 15 14400 > th dose independent rect. 18 5
29 450.44 temperature 15 14400 < th dose independent rect. 11 13
56 450.78 temperature 15 14400 < th dose independent rect. 19 4
73 451.06 humidity 80 43200 < th dose dependent rect. 22 8
76 451.15 temperature 15 14400 > th dose independent sin 21 NA
79 451.20 temperature 15 14400 < th dose independent rect. 16 8
117 451.69 temperature 15 14400 < th dose independent rect. 6 4
125 451.79 humidity 50 43200 < th dose dependent rect. 18 1
139 452.08 humidity 80 43200 < th dose dependent rect. 4 1
145 452.13 humidity 80 43200 < th dose dependent rect. 3 3
150 452.21 temperature 15 14400 < th dose dependent rect. 4 18
157 452.32 temperature 15 14400 < th dose dependent rect. 5 15
163 452.34 temperature 15 14400 < th dose dependent sin 23 NA
164 452.37 humidity 60 14400 < th dose independent rect. 19 13
184 452.60 humidity 50 43200 < th dose dependent rect. 17 3
185 452.63 temperature 15 14400 < th dose dependent rect. 9 1
209 453.01 temperature 15 14400 > th dose independent rect. 21 1
215 453.08 humidity 60 14400 < th dose dependent rect. 19 13
216 453.09 temperature 15 14400 < th dose dependent rect. 9 6
238 453.29 temperature 15 14400 < th dose dependent rect. 21 1
254 453.34 temperature 15 14400 < th dose dependent rect. 8 3
260 453.44 temperature 15 14400 < th dose dependent rect. 5 5
263 453.47 temperature 15 14400 < th dose independent rect. 11 7
266 453.48 temperature 15 14400 < th dose dependent rect. 6 7
270 453.51 radiation 20 14400 < th dose independent rect. 3 3
286 453.65 temperature 15 14400 < th dose dependent rect. 17 6
300 453.80 temperature 15 14400 < th dose dependent rect. 6 1
308 453.91 temperature 15 14400 < th dose independent rect. 6 2
310 453.91 temperature 15 14400 < th dose dependent rect. 11 2
323 453.98 humidity 50 43200 < th dose independent rect. 18 2
362 454.49 radiation 20 14400 < th dose independent rect. 18 12
377 454.67 humidity 60 14400 > th dose independent rect. 19 3
404 454.90 temperature 15 4320 > th dose independent rect. 18 2
417 455.04 temperature 15 4320 < th dose independent rect. 18 1
423 455.08 temperature 15 14400 < th dose independent rect. 12 1
474 455.53 humidity 70 14400 < th dose independent rect. 21 1
486 455.55 radiation 20 4320 > th dose independent rect. 6 2
503 455.56 radiation 20 4320 > th dose dependent rect. 6 2
561 456.00 humidity 70 43200 > th dose independent rect. 5 1
587 456.27 temperature 15 14400 > th dose independent rect. 7 4
621 456.71 radiation 30 4320 < th dose independent rect. 17 14
627 456.75 humidity 50 43200 < th dose dependent rect. 17 17
636 456.83 radiation 30 4320 < th dose independent rect. 20 11
639 456.86 humidity 80 43200 < th dose independent rect. 1 1
646 456.91 radiation 30 4320 < th dose independent rect. 24 7
649 456.95 humidity 60 43200 > th dose independent rect. 23 1
660 457.00 temperature 20 1440 < th dose dependent rect. 22 1
692 457.31 humidity 60 43200 < th dose dependent rect. 22 2
737 457.63 temperature 15 14400 > th dose independent rect. 12 2
756 457.84 temperature 15 720 > th dose independent rect. 18 23
806 458.27 temperature 15 720 > th dose independent rect. 21 8
835 458.50 temperature 20 720 > th dose independent rect. 5 12
839 458.53 temperature 20 1440 < th dose dependent rect. 19 5
844 458.56 temperature 20 1440 < th dose dependent rect. 18 7
861 458.61 temperature 15 1440 > th dose independent rect. 23 7
908 458.92 humidity 60 43200 > th dose independent rect. 3 3
911 458.95 humidity 80 43200 > th dose independent rect. 1 1
923 459.02 humidity 80 4320 > th dose independent rect. 18 1
925 459.02 temperature 15 720 > th dose independent rect. 18 12
952 459.22 humidity 60 43200 > th dose independent rect. 3 1
963 459.30 temperature 15 14400 < th dose independent rect. 10 23
970 459.32 temperature 15 4320 > th dose independent rect. 17 13
978 459.38 wind 9 14400 > th dose dependent rect. 19 1
984 459.42 humidity 50 43200 < th dose dependent rect. 9 1
995 459.47 temperature 15 4320 < th dose independent rect. 18 12