BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0106700 Os07g0106700|AK068158
         (99 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0106700  Similar to Aminotransferase-like protein            180   2e-46
Os12g0584700  Hypothetical protein                                114   1e-26
Os08g0302700                                                      110   2e-25
Os10g0208500  Conserved hypothetical protein                       82   9e-17

>Os07g0106700 Similar to Aminotransferase-like protein
          Length = 99

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/99 (88%), Positives = 88/99 (88%)

Query: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQGLVRINTEDFRFPKSG 60
          SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQGLVRINTEDFRFPKSG
Sbjct: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQGLVRINTEDFRFPKSG 60

Query: 61 VYTHXXXXXXXXXXXQWPVFVAHGDDAINTSWMGDASCR 99
          VYTH           QWPVFVAHGDDAINTSWMGDASCR
Sbjct: 61 VYTHRPASPPRSSSSQWPVFVAHGDDAINTSWMGDASCR 99



>Os12g0584700 Hypothetical protein
          Length = 187

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 57/63 (90%), Gaps = 6/63 (9%)

Query: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQGLVRINTEDFRFPKSG 60
          SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPN      INTEDFRFPKSG
Sbjct: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPN------INTEDFRFPKSG 54

Query: 61 VYT 63
          VYT
Sbjct: 55 VYT 57



>Os08g0302700 
          Length = 155

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/57 (92%), Positives = 53/57 (92%), Gaps = 2/57 (3%)

Query: 8  GLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQGLVRINTEDFRFPKSGVYTH 64
          GLVPQSTACGML GPLYYFVFRCCSLIVVGLPGPN  GLVRINTEDFRFPKSGVYT 
Sbjct: 24 GLVPQSTACGMLIGPLYYFVFRCCSLIVVGLPGPN--GLVRINTEDFRFPKSGVYTQ 78



>Os10g0208500 Conserved hypothetical protein
          Length = 45

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 40/44 (90%)

Query: 1  SECGLVLGLVPQSTACGMLTGPLYYFVFRCCSLIVVGLPGPNIQ 44
          SECG +LGLVPQSTACGM TGPLYYF FRCCSLIVVGLPGPN+ 
Sbjct: 1  SECGSILGLVPQSTACGMSTGPLYYFAFRCCSLIVVGLPGPNVS 44



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.143    0.489 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,396,864
Number of extensions: 107304
Number of successful extensions: 228
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 4
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)