BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0206500 Os10g0206500|Os10g0206500
         (188 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0206500  Conserved hypothetical protein                      328   9e-91
Os10g0208600  Conserved hypothetical protein                      187   4e-48

>Os10g0206500 Conserved hypothetical protein
          Length = 188

 Score =  328 bits (842), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 161/168 (95%), Positives = 161/168 (95%)

Query: 21  ISTMPMELYFSPGELARIAGYGEEPVSTVVVSGQVACELCLCPGSDLLTFELPGAKVEVA 80
           ISTMPMELYFSPGELARIAGYGEEPVSTVVVSGQVACELCLCPGSDLLTFELPGAKVEVA
Sbjct: 21  ISTMPMELYFSPGELARIAGYGEEPVSTVVVSGQVACELCLCPGSDLLTFELPGAKVEVA 80

Query: 81  CETEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRP 140
           CETEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRP
Sbjct: 81  CETEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRP 140

Query: 141 AASYRIRPXXXXXXXADGFRAYTAGVIRLQHGGTPSGECVQVEDRVDK 188
           AASYRIRP       ADGFRAYTAGVIRLQHGGTPSGECVQVEDRVDK
Sbjct: 141 AASYRIRPSSSLSSSADGFRAYTAGVIRLQHGGTPSGECVQVEDRVDK 188



>Os10g0208600 Conserved hypothetical protein
          Length = 197

 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/154 (65%), Positives = 110/154 (71%), Gaps = 5/154 (3%)

Query: 24  MPMELYFSPGELARIAGYGEEPVSTVVVSGQVACELCLCP-GSDLLTFELPGAKVEVACE 82
           MPME YFSP EL RIAGYGEE VSTV+VSG+V C+L L P GSDLL+ ELPGA V VACE
Sbjct: 38  MPMEAYFSPAELVRIAGYGEELVSTVIVSGKVVCKLSLRPPGSDLLSIELPGATVGVACE 97

Query: 83  TEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGLRHRPAA 142
           T G  T ANSVFT TDE GNFT  LPSRLHATP+LE AC VKVLQLP D AC  R  P+ 
Sbjct: 98  TGGIKTMANSVFTVTDENGNFTIELPSRLHATPNLEKACSVKVLQLPLDCACWPRRSPSY 157

Query: 143 SYRIRPXXXXXXXADGFRAYTAGVIRLQHGGTPS 176
            + I+         DG R+YT GVIRLQH  T S
Sbjct: 158 YHGIQ----LSSSEDGIRSYTTGVIRLQHHDTKS 187



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,284,645
Number of extensions: 246378
Number of successful extensions: 375
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,075,471
Effective search space: 1123018803
Effective search space used: 1123018803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)