BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0204300 Os10g0204300|AK072115
         (48 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0204300  Similar to Phosphoenolpyruvate carboxykinase         95   9e-21
Os10g0204400  Similar to Phosphoenolpyruvate carboxykinase (...    80   3e-16

>Os10g0204300 Similar to Phosphoenolpyruvate carboxykinase
          Length = 48

 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  QNSGENKLILLKLADLFKRNFKVFANYKKGGVRDLADEIAAAGPNFLF 48
          QNSGENKLILLKLADLFKRNFKVFANYKKGGVRDLADEIAAAGPNFLF
Sbjct: 1  QNSGENKLILLKLADLFKRNFKVFANYKKGGVRDLADEIAAAGPNFLF 48



>Os10g0204400 Similar to Phosphoenolpyruvate carboxykinase (Fragment)
          Length = 637

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 7   KLILLKLADLFKRNFKVFANYKKGGVRDLADEIAAAGPNF 46
           KL LLKL+DLFKRNFKVFANYKKGGV DLADEIAAAGPNF
Sbjct: 598 KLTLLKLSDLFKRNFKVFANYKKGGVSDLADEIAAAGPNF 637



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.142    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,538,483
Number of extensions: 38573
Number of successful extensions: 59
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 48
Length of database: 17,035,801
Length adjustment: 21
Effective length of query: 27
Effective length of database: 15,939,307
Effective search space: 430361289
Effective search space used: 430361289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)