BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0188100 Os10g0188100|AK100664
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0188100 Transcription initiation factor IIF, alpha sub... 832 0.0
Os03g0251800 Similar to Possible OmpA family member precursor 459 e-129
>Os10g0188100 Transcription initiation factor IIF, alpha subunit family protein
Length = 529
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/529 (78%), Positives = 414/529 (78%)
Query: 1 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60
MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY
Sbjct: 1 MGSADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIREY 60
Query: 61 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120
NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI
Sbjct: 61 NVRANATTDKSFSIGRFVTGLPPFSKKKSAENKWSLHKEGLQGRQIPENMREKYNRKPWI 120
Query: 121 LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE 180
LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE
Sbjct: 121 LEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAE 180
Query: 181 EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPXXXXXXXXXXXX 240
EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARP
Sbjct: 181 EKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNS 240
Query: 241 XXXXXXXXXXAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300
AARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
Sbjct: 241 DKGEEDEEEEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA 300
Query: 301 VDIDPEERADLAPEIPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
VDIDPEERADLAPEIPAPPEIKQDD
Sbjct: 301 VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGKAAGLNESDADEDD 360
Query: 361 XXXXXXXXXXPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPXXXXXXXXXXXXXXXX 420
PVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPP
Sbjct: 361 EDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPASKSKQKRKSGGGDDS 420
Query: 421 XXXXXXXXXXXXXTKPSVAKDEXXXXXXXXXXXXXXXXXXXNVSPVTEDEIRTVLLAVAP 480
TKPSVAKDE NVSPVTEDEIRTVLLAVAP
Sbjct: 421 KASGGAASKKAKDTKPSVAKDETPSSSKPASKATAASKTSANVSPVTEDEIRTVLLAVAP 480
Query: 481 VTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK 529
VTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK
Sbjct: 481 VTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK 529
>Os03g0251800 Similar to Possible OmpA family member precursor
Length = 527
Score = 459 bits (1182), Expect = e-129, Method: Compositional matrix adjust.
Identities = 258/538 (47%), Positives = 314/538 (58%), Gaps = 20/538 (3%)
Query: 1 MG-SAD-LVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKSMALSGARCLVCSAPITNLIR 58
MG SAD LVLKAACE CGS SDL+GT C+H TLC SCG +MA SG C VC+API +LIR
Sbjct: 1 MGVSADGLVLKAACERCGSSSDLHGTGCRHATLCVSCGSAMARSGDCCPVCAAPIASLIR 60
Query: 59 EYNVRANATTDKSFSIGRFVTGLPPFSKKKSAENK-WSLHKEGLQGRQIPENMREKY-NR 116
EYNV + T +K ++IG+F TG+PPFS +++A ++ WSLH EG QGRQ N+ E NR
Sbjct: 61 EYNVLVDTTGEKQYTIGKFTTGVPPFSDRENAGSRSWSLHPEGQQGRQPTGNIWENCSNR 120
Query: 117 KPWILEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTL 176
K ILED+TG YQYQGQ++G QS+ +TYYLLMMHGK+ HA PA SWYNFSKI+QYKQLTL
Sbjct: 121 KSCILEDDTGDYQYQGQIQGLQSAASTYYLLMMHGKDVHAVPADSWYNFSKISQYKQLTL 180
Query: 177 EEAEEKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPXXXXXXXX 236
EEAEEKM++R+++ATGY RWMMKAATNG AAF SDV +L+ N E +
Sbjct: 181 EEAEEKMSRRRSTATGYGRWMMKAATNGAAAFSSDVTQLDDANEGETDQVH------LKK 234
Query: 237 XXXXXXXXXXXXXXAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTD 296
+ + + K +EEG KD DFDLDDEIEKGDDWEHEE FTD
Sbjct: 235 GNKNGDENKSDKGSGEERAHVPMTKGR---EEEGSKDRDFDLDDEIEKGDDWEHEEIFTD 291
Query: 297 DDEAVDIDPEERADLA-PEIPAPPEIKQDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
DDEAVD+DPEE DLA PEIPAPPEIKQDD
Sbjct: 292 DDEAVDVDPEEGGDLADPEIPAPPEIKQDD--NEKHGGVGLSKSGKELKKLLRRAAGQNE 349
Query: 356 XXXXXXXXXXXXXXXPVLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPXXXXXXXXXXX 415
PVLAPKQ+DQ K EP +++ +KPT GH TP
Sbjct: 350 SDDDDEDTDEDESPSPVLAPKQQDQLKSEPQEDNHSKPTVLGHPYSTPHVSKSNQKRRQR 409
Query: 416 XXXXXXXXXXXXXXXXXXTKPSVAKDEXXXXXXXXXXXXXXXXXXXNVSPVTEDEIRTVL 475
TK V K+E NVSP+T +EIR VL
Sbjct: 410 GDDSKTCATPKKPKIEPDTKKIVVKEETSCSLEPTSEPFASARSDTNVSPITVEEIRVVL 469
Query: 476 LAVAPVT----TQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRDDKK 529
AP+ ++D + RF RLR PED+ F L+KIS +QK NG Y++L ++ K
Sbjct: 470 RLYAPIAMRDFSKDFMPRFSPRLRSPEDREVFLANLRKISHLQKINGQKYIILLEEYK 527
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,725,464
Number of extensions: 613149
Number of successful extensions: 3111
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 4
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)