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Os10g0188100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription initiation factor IIF, alpha subunit family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0122) R2 : 0.0927
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.175 (0.0257) R2dN8 : 0.12 R2N8 : 0.0927
σ : 0.23
deviance : 24.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.49 0.173 10.5 0.349 0.346 -0.14 -0.116 0.241 0.206 5.66 40.18 10 -- --
13.63 0.172 10.5 0.354 0.347 -0.136 -0.127 -- 0.207 5.63 40.55 10 -- --
13.52 0.171 10.5 0.349 0.346 -0.141 -- 0.244 0.207 5.68 40.18 10 -- --
13.67 0.172 10.5 0.355 0.346 -0.141 -- -- 0.207 5.69 40.52 10 -- --
19.68 0.207 10.5 0.356 -- -0.172 -- 0.256 0.207 -- 41.38 10 -- --
14.11 0.176 10.5 0.351 0.355 -- -0.163 -- 0.206 5.2 -- -- -- --
14.18 0.176 10.5 0.352 0.355 -- -- -- 0.207 5.24 -- -- -- --
18.28 0.199 10.6 0.341 -- -0.25 -- -- 0.212 -- 39.8 528 -- --
16.54 0.189 10.5 -- 0.34 -0.237 -- -- 0.196 5.52 49.98 98 -- --
20.75 0.213 10.5 0.364 -- -- -- -- 0.216 -- -- -- -- --
17.44 0.195 10.5 -- 0.361 -- -- -- 0.168 5.21 -- -- -- --
21.55 0.216 10.6 -- -- -0.437 -- -- 0.198 -- 49.66 384 -- --
24.24 0.23 10.6 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.05 humidity 70.0 10 > th dose independent rect. 4 13
3 13.10 temperature 10.0 90 > th dose dependent rect. 24 13
4 13.13 temperature 25.0 10 > th dose independent rect. 9 5
7 13.14 temperature 20.0 10 > th dose dependent rect. 24 14
8 13.14 temperature 20.0 90 > th dose dependent rect. 22 15
9 13.14 temperature 20.0 10 > th dose dependent rect. 22 16
10 13.15 radiation 40.0 10 < th dose independent rect. 4 13
12 13.15 temperature 30.0 10 < th dose dependent rect. 4 13
15 13.16 humidity 80.0 720 < th dose independent rect. 11 1
16 13.16 radiation 20.0 30 < th dose independent rect. 18 23
17 13.16 humidity 50.0 10 > th dose dependent rect. 4 13
20 13.17 wind 3.0 720 > th dose independent rect. 8 5
22 13.17 wind 1.0 270 < th dose dependent rect. 14 1
23 13.17 wind 1.0 720 > th dose dependent rect. 8 5
25 13.17 radiation 10.0 270 < th dose dependent rect. 3 13
28 13.18 wind 9.0 270 < th dose independent rect. 10 23
32 13.19 wind 1.0 270 < th dose independent rect. 14 1
38 13.20 temperature 30.0 10 < th dose independent rect. 4 13
39 13.20 wind 1.0 30 > th dose independent rect. 14 19
44 13.21 radiation 40.0 270 > th dose independent rect. 15 1
62 13.21 radiation 40.0 270 > th dose dependent rect. 15 1
77 13.21 radiation 40.0 10 < th dose dependent rect. 4 13
84 13.21 temperature 10.0 90 > th dose dependent rect. 9 18
85 13.22 radiation 20.0 30 < th dose independent rect. 4 13
87 13.22 temperature 20.0 10 > th dose dependent rect. 9 5
100 13.23 temperature 10.0 10 > th dose dependent rect. 9 18
102 13.23 radiation 40.0 10 < th dose dependent rect. 18 23
118 13.26 humidity 80.0 30 < th dose independent rect. 9 5
123 13.26 atmosphere 1010.0 10 < th dose dependent rect. 12 1
134 13.27 wind 5.0 1440 > th dose independent rect. 7 1
139 13.27 radiation 20.0 30 > th dose independent rect. 15 23
142 13.27 wind 3.0 720 > th dose dependent rect. 3 10
150 13.28 wind 5.0 1440 > th dose independent rect. 5 5
151 13.28 wind 5.0 1440 < th dose independent rect. 5 5
153 13.28 radiation 20.0 30 > th dose independent rect. 8 6
155 13.28 radiation 40.0 30 < th dose independent rect. 18 23
169 13.28 temperature 20.0 10 > th dose dependent rect. 17 21
170 13.29 wind 5.0 1440 < th dose independent rect. 7 1
173 13.29 wind 5.0 1440 < th dose independent rect. 7 3
178 13.29 wind 7.0 270 < th dose independent rect. 12 9
182 13.29 wind 7.0 720 < th dose independent rect. 3 12
192 13.29 wind 7.0 90 < th dose independent rect. 13 20
194 13.29 wind 7.0 270 < th dose independent rect. 11 21
218 13.30 wind 5.0 1440 < th dose independent rect. 3 9
220 13.30 wind 1.0 270 > th dose independent rect. 11 11
223 13.30 wind 1.0 720 > th dose independent rect. 10 15
281 13.31 radiation 1.0 30 > th dose dependent rect. 9 5
284 13.31 temperature 20.0 10 > th dose dependent rect. 6 8
296 13.31 radiation 1.0 30 > th dose dependent rect. 17 21
313 13.32 temperature 25.0 270 < th dose dependent rect. 12 5
315 13.32 radiation 1.0 30 > th dose dependent rect. 6 8
324 13.32 radiation 1.0 10 > th dose dependent rect. 15 23
326 13.33 precipitation 0.1 1440 < th dose independent rect. 4 3
335 13.33 humidity 80.0 90 < th dose independent rect. 9 9
336 13.33 wind 1.0 720 < th dose independent rect. 9 10
341 13.33 temperature 20.0 90 > th dose independent rect. 23 14
344 13.33 wind 1.0 10 > th dose independent rect. 14 16
345 13.33 temperature 25.0 270 < th dose independent rect. 3 17
347 13.33 temperature 25.0 270 < th dose independent rect. 11 21
348 13.33 wind 9.0 10 < th dose independent rect. 13 23
349 13.33 radiation 40.0 30 < th dose independent rect. 3 23
350 13.33 wind 5.0 720 < th dose dependent rect. 11 2
351 13.33 precipitation 0.1 1440 < th dose dependent rect. 4 3
356 13.33 humidity 90.0 10 < th dose dependent rect. 9 5
381 13.34 temperature 25.0 270 < th dose independent rect. 12 4
396 13.34 temperature 20.0 30 > th dose independent rect. 9 18
401 13.34 radiation 20.0 30 < th dose independent rect. 3 23
402 13.34 radiation 10.0 270 < th dose dependent sin 2 NA
414 13.34 humidity 90.0 10 < th dose dependent rect. 6 8
434 13.34 temperature 30.0 10 < th dose dependent rect. 4 17
445 13.35 radiation 20.0 90 > th dose independent rect. 11 2
446 13.35 precipitation 0.1 1440 > th dose independent rect. 4 2
471 13.35 wind 1.0 270 < th dose independent rect. 13 11
474 13.35 temperature 25.0 270 < th dose independent rect. 3 14
494 13.35 wind 1.0 720 < th dose dependent rect. 9 10
537 13.36 temperature 20.0 270 > th dose independent rect. 9 1
548 13.36 temperature 25.0 10 > th dose independent rect. 9 9
556 13.36 wind 1.0 270 < th dose independent rect. 9 15
559 13.36 wind 9.0 720 < th dose independent rect. 13 17
568 13.36 wind 3.0 720 > th dose dependent rect. 8 1
569 13.36 humidity 70.0 30 < th dose dependent rect. 12 1
571 13.36 precipitation 0.1 1440 > th dose dependent rect. 4 2
572 13.36 wind 3.0 1440 > th dose dependent rect. 7 3
601 13.36 humidity 90.0 10 < th dose dependent rect. 24 14
626 13.37 humidity 70.0 90 < th dose independent rect. 11 2
645 13.37 radiation 1.0 270 < th dose independent rect. 3 14
657 13.37 wind 7.0 720 < th dose independent rect. 18 21
659 13.37 temperature 10.0 270 > th dose dependent rect. 9 1
661 13.37 radiation 1.0 90 > th dose dependent rect. 11 2
665 13.37 wind 1.0 720 < th dose dependent rect. 9 6
671 13.37 wind 9.0 720 < th dose dependent rect. 8 7
711 13.38 wind 1.0 720 < th dose independent rect. 9 6
714 13.38 wind 7.0 30 < th dose independent rect. 13 8
719 13.38 temperature 15.0 90 > th dose independent rect. 13 11
725 13.38 humidity 80.0 30 < th dose independent rect. 1 13
731 13.38 radiation 40.0 10 < th dose independent rect. 4 17
736 13.38 radiation 40.0 10 < th dose independent rect. 3 21
746 13.38 wind 5.0 720 < th dose dependent rect. 9 5
797 13.38 temperature 20.0 10 > th dose dependent rect. 6 21
798 13.38 temperature 10.0 10 > th dose dependent rect. 17 21
805 13.38 radiation 40.0 10 < th dose dependent rect. 3 23
806 13.39 wind 1.0 14400 < th dose independent rect. 1 2
822 13.39 humidity 70.0 10 > th dose independent rect. 4 10
827 13.39 humidity 80.0 30 < th dose independent rect. 3 11
836 13.39 atmosphere 1000.0 90 > th dose independent rect. 23 14
850 13.39 wind 1.0 270 > th dose independent rect. 11 21
852 13.39 temperature 20.0 30 > th dose independent rect. 17 21
853 13.39 radiation 20.0 30 < th dose independent rect. 3 21
855 13.39 humidity 70.0 10 > th dose independent rect. 19 22
857 13.39 humidity 60.0 10 > th dose dependent sin 0 NA
949 13.40 humidity 70.0 10 > th dose independent rect. 4 8
989 13.40 temperature 15.0 90 > th dose independent rect. 13 20
998 13.40 humidity 90.0 10 < th dose dependent sin 1 NA