BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0188100 Os10g0188100|AK100664
         (529 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12610.2  | chr4:7455565-7458318 FORWARD LENGTH=507            164   9e-41

>AT4G12610.2 | chr4:7455565-7458318 FORWARD LENGTH=507
          Length = 506

 Score =  164 bits (416), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 103/180 (57%), Positives = 117/180 (65%), Gaps = 5/180 (2%)

Query: 149 MHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAEEKMNKRKTSATGYERWMMKAATNGPAAF 208
           M  KEF A PAGSWYNF+K+AQYKQLTLEEAEEKM  R+ +A GY+RWMMKAA NGPA F
Sbjct: 1   MQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALF 60

Query: 209 GS--DVKKLEPTNGTEKENARPXXXXXXXXXXXXXXXXXXXXXXAARKNRLALNKKSMDD 266
           G   + K+   T+G      +                       A+RK+RL LN+KS DD
Sbjct: 61  GEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDD 120

Query: 267 DEEGG--KDLDFDLDDEIEKGDDWEHEETFTDDDEAVDIDPEERAD-LAPEIPAPPEIKQ 323
           D+E G         DD+IEKGDDWEHEE FTDDDEAV  DPEER D LAPEIPAPPEIKQ
Sbjct: 121 DDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQ 180



 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 372 VLAPKQKDQPKDEPVDNSPAKPTPSGHARGTPPXXXXXXXXXXXXXXXXXXXXXXXXXXX 431
           V   KQK+  K+EPVDN+PAKP PSG  RGTPP                           
Sbjct: 233 VTNSKQKEAAKEEPVDNAPAKPAPSGPPRGTPPAKPSKGKRKLNDGDSKKPSSSVQKKVK 292

Query: 432 XXTKP-SVAKDEXXXXXXXXXXXXXXXXXXXN----------VSPVTEDEIRTVLLAVAP 480
               P S  K+E                                PVTEDEIR VL+    
Sbjct: 293 TENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQ 352

Query: 481 VTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNG-HNYVVLRD 526
           VTTQDLVSRFK+RL+  EDKNAFA IL+KISKIQK  G  N+VVLR+
Sbjct: 353 VTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLRE 399



 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 466 VTEDEIRTVLLAVAPVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHN--YVV 523
           VTEDEIR VL+    +TT +LV RFK RL   EDK++F+ ILKKI+K+QK  G     VV
Sbjct: 429 VTEDEIRKVLMEKKQLTTLELVMRFKERLTTTEDKDSFSHILKKIAKLQKNPGSEKFVVV 488

Query: 524 LRDD 527
           LRD+
Sbjct: 489 LRDN 492



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,037,952
Number of extensions: 394590
Number of successful extensions: 2052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2049
Number of HSP's successfully gapped: 4
Length of query: 529
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 426
Effective length of database: 8,282,721
Effective search space: 3528439146
Effective search space used: 3528439146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)