BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0178200 Os10g0178200|AK106781
         (199 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0178200  Ankyrin repeat containing protein                   324   3e-89
Os07g0240400  Conserved hypothetical protein                       96   1e-20

>Os10g0178200 Ankyrin repeat containing protein
          Length = 199

 Score =  324 bits (830), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 166/199 (83%)

Query: 1   MDESDEQSNXXXXXXHRGYEWKLPAALSANTTSVHVTALDGVVNVNSLFTVAVFVGLSLA 60
           MDESDEQSN      HRGYEWKLPAALSANTTSVHVTALDGVVNVNSLFTVAVFVGLSLA
Sbjct: 1   MDESDEQSNGGGGGGHRGYEWKLPAALSANTTSVHVTALDGVVNVNSLFTVAVFVGLSLA 60

Query: 61  DPGELRSLAGDASCDAGQGVARXXXXXXXXXXXXXXXXXXXXQGLKLALNLINSKDPHDT 120
           DPGELRSLAGDASCDAGQGVAR                    QGLKLALNLINSKDPHDT
Sbjct: 61  DPGELRSLAGDASCDAGQGVARSLLVLEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDT 120

Query: 121 LHAHIDARLLRLGMLASAVGSVVGCVFLMVSMVMVVQIRLGTLGCATNRXXXXXXXGLVG 180
           LHAHIDARLLRLGMLASAVGSVVGCVFLMVSMVMVVQIRLGTLGCATNR       GLVG
Sbjct: 121 LHAHIDARLLRLGMLASAVGSVVGCVFLMVSMVMVVQIRLGTLGCATNRAAAKAAAGLVG 180

Query: 181 LVTTALAVYVGTVFYTFTH 199
           LVTTALAVYVGTVFYTFTH
Sbjct: 181 LVTTALAVYVGTVFYTFTH 199



>Os07g0240400 Conserved hypothetical protein
          Length = 199

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 93/186 (50%), Gaps = 22/186 (11%)

Query: 32  TSVHVTALDGVVNVNSLFTVAVFVGLSLADPGELRSLAGDA-----SCDAGQGVARXXXX 86
           TS+H+TALDG+VNVNSLFT+A F+GL+     +   LAG A     +C AG  V      
Sbjct: 18  TSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADRLGSACAAGDRVESDLVL 77

Query: 87  XXXXXXXXXXXXXXXXQGLKLALNLINSKDPHDTLH------------AHIDARLLRLGM 134
                             + L L  I    PH  L             A I+   LR+G+
Sbjct: 78  FHVLAFACFLFSSI----VALCLKQIVRTHPHYRLRSGGGGGSAVSRTAMINRVALRVGI 133

Query: 135 LASAVGSVVGCVFLMVSMVMVVQIRLGTL-GCATNRXXXXXXXGLVGLVTTALAVYVGTV 193
           LASAVGSV GC FLM+++V VVQ++LG L   A           LV LV TA+ +Y+G V
Sbjct: 134 LASAVGSVCGCGFLMMALVNVVQVKLGRLGCGAGGAAAWGAVVPLVSLVPTAMLIYIGIV 193

Query: 194 FYTFTH 199
           FY FT 
Sbjct: 194 FYAFTR 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,669,150
Number of extensions: 126526
Number of successful extensions: 344
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)