Os07g0240400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0240400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.75 | 0.351 | 10.4 | -0.436 | 0.184 | 0.927 | 0.262 | -1.31 | 0.204 | 10.4 | 29.18 | 1196 | -- | -- |
| 55.8 | 0.348 | 10.3 | -0.186 | 0.18 | 0.776 | 0.276 | -- | 0.244 | 10.3 | 30.55 | 1162 | -- | -- |
| 56.01 | 0.349 | 10.4 | -0.432 | 0.182 | 0.921 | -- | -1.31 | 0.185 | 10.2 | 28.95 | 1201 | -- | -- |
| 56.11 | 0.349 | 10.3 | -0.172 | 0.175 | 0.77 | -- | -- | 0.246 | 10.3 | 30.46 | 1166 | -- | -- |
| 57.91 | 0.354 | 10.4 | -0.399 | -- | 0.874 | -- | -1.17 | 0.202 | -- | 29.2 | 1220 | -- | -- |
| 84.03 | 0.43 | 10.4 | 0.0163 | 0.115 | -- | 0.185 | -- | 0.102 | 7.47 | -- | -- | -- | -- |
| 84.13 | 0.43 | 10.4 | 0.0205 | 0.115 | -- | -- | -- | 0.101 | 7.42 | -- | -- | -- | -- |
| 57.9 | 0.354 | 10.3 | -0.175 | -- | 0.743 | -- | -- | 0.243 | -- | 30.5 | 1181 | -- | -- |
| 56.87 | 0.351 | 10.3 | -- | 0.171 | 0.755 | -- | -- | 0.264 | 10.4 | 30.55 | 1162 | -- | -- |
| 84.83 | 0.43 | 10.4 | 0.0223 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 84.14 | 0.429 | 10.4 | -- | 0.115 | -- | -- | -- | 0.0992 | 7.41 | -- | -- | -- | -- |
| 58.62 | 0.357 | 10.3 | -- | -- | 0.718 | -- | -- | 0.253 | -- | 30.72 | 1172 | -- | -- |
| 84.85 | 0.43 | 10.4 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.70 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 4 | 57.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 5 | 57.53 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 9 | 57.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 10 | 57.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 12 | 57.89 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 13 | 57.91 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
| 14 | 57.94 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 31 | 58.12 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 57 | 58.46 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 80 | 58.62 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 201 | 59.10 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 333 | 59.37 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 495 | 59.53 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 508 | 59.59 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 525 | 59.66 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 527 | 59.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 564 | 59.75 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 579 | 59.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 627 | 59.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 678 | 59.85 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 848 | 60.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 889 | 60.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 896 | 60.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 910 | 60.19 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 981 | 60.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |