BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0240400 Os07g0240400|AK062643
         (199 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0240400  Conserved hypothetical protein                      317   5e-87
Os10g0178200  Ankyrin repeat containing protein                   124   3e-29

>Os07g0240400 Conserved hypothetical protein
          Length = 199

 Score =  317 bits (811), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 166/199 (83%)

Query: 1   MDTXXXXXXXXXXXXXXTSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADR 60
           MDT              TSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADR
Sbjct: 1   MDTGSGGGGGGGGGGGGTSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADR 60

Query: 61  LGSACAAGDRVESDLVLFHVLAFACFLFSSIVALCLKQIVRTHPHYRLRXXXXXXXAVSR 120
           LGSACAAGDRVESDLVLFHVLAFACFLFSSIVALCLKQIVRTHPHYRLR       AVSR
Sbjct: 61  LGSACAAGDRVESDLVLFHVLAFACFLFSSIVALCLKQIVRTHPHYRLRSGGGGGSAVSR 120

Query: 121 TAMINRVALRVGILASAVGSVCGCGFLMMALVNVVQVKLGRLXXXXXXXXXXXXVVPLVS 180
           TAMINRVALRVGILASAVGSVCGCGFLMMALVNVVQVKLGRL            VVPLVS
Sbjct: 121 TAMINRVALRVGILASAVGSVCGCGFLMMALVNVVQVKLGRLGCGAGGAAAWGAVVPLVS 180

Query: 181 LVPTAMLIYIGIVFYAFTR 199
           LVPTAMLIYIGIVFYAFTR
Sbjct: 181 LVPTAMLIYIGIVFYAFTR 199



>Os10g0178200 Ankyrin repeat containing protein
          Length = 199

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 107/186 (57%), Gaps = 22/186 (11%)

Query: 18  TSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADRLGSACAAGDRVESDLVL 77
           TS+H+TALDG+VNVNSLFT+A F+GL+     +   LAG A     +C AG  V   L++
Sbjct: 32  TSVHVTALDGVVNVNSLFTVAVFVGLSLADPGELRSLAGDA-----SCDAGQGVARSLLV 86

Query: 78  FHVLAFACFLFSSIVA----LCLKQIVRTHPHYRLRXXXXXXXAVSRTAMINRVALRVGI 133
             V+AF+ FLFSS+VA    L L  I    PH  L             A I+   LR+G+
Sbjct: 87  LEVVAFSSFLFSSLVAQGLKLALNLINSKDPHDTLH------------AHIDARLLRLGM 134

Query: 134 LASAVGSVCGCGFLMMALVNVVQVKLGRLXXXXXXXXXXXXVVPLVSLVPTAMLIYIGIV 193
           LASAVGSV GC FLM+++V VVQ++LG L               LV LV TA+ +Y+G V
Sbjct: 135 LASAVGSVVGCVFLMVSMVMVVQIRLGTL-GCATNRAAAKAAAGLVGLVTTALAVYVGTV 193

Query: 194 FYAFTR 199
           FY FT 
Sbjct: 194 FYTFTH 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,950,951
Number of extensions: 159872
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 3
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 153 (63.5 bits)