BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0240400 Os07g0240400|AK062643
(199 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05950.1 | chr5:1788814-1789341 FORWARD LENGTH=176 160 3e-40
AT3G46890.1 | chr3:17266416-17267030 REVERSE LENGTH=205 103 6e-23
AT2G01580.1 | chr2:265181-265756 REVERSE LENGTH=192 95 3e-20
AT3G07510.1 | chr3:2393895-2394464 REVERSE LENGTH=190 89 1e-18
>AT5G05950.1 | chr5:1788814-1789341 FORWARD LENGTH=176
Length = 175
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 114/182 (62%), Gaps = 9/182 (4%)
Query: 18 TSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADRLGSACAAGDRVESDLVL 77
TSIHITALDGIVNVNSLFTLA FIGLAW P+ L + C R+ +LV
Sbjct: 3 TSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPN-----CVPTARMAENLVA 57
Query: 78 FHVLAFACFLFSSIVALCLKQIVRTHPHYRLRXXXXXXXAVSRTAMINRVALRVGILASA 137
FHV +FA FLFSS++AL LKQ +R + V +N+ ALR G++ S
Sbjct: 58 FHVYSFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYY---VNKTALRFGMVTSG 114
Query: 138 VGSVCGCGFLMMALVNVVQVKLGRLXXXXXXXXXXXXVVPLVSLVPTAMLIYIGIVFYAF 197
+GSVCGCGFLM+AL+NVVQ+KLG L VVPLV LVP+A+ IY+ ++ YAF
Sbjct: 115 LGSVCGCGFLMLALINVVQIKLGTL-GCGASGHTYAAVVPLVILVPSALFIYVSLMLYAF 173
Query: 198 TR 199
TR
Sbjct: 174 TR 175
>AT3G46890.1 | chr3:17266416-17267030 REVERSE LENGTH=205
Length = 204
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 18 TSIHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADRLG---SACAAGDRVESD 74
T IH+TA+DGIVNVNSLF+LA F+GL + P + ++ A G +
Sbjct: 19 TLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAER 78
Query: 75 LVLFHVLAFACFLFSSIVALCLKQIVRTHPHYRLRXXXXXXXAV--SRTAMINRVALRVG 132
LV HV +F+ FLFSS++A+ LKQ +RT V + +N ALRVG
Sbjct: 79 LVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLAALRVG 138
Query: 133 ILASAVGSVCGCGFLMMALVNVVQVKLGRLXXXXXXXXXXXXVVPLVSLVPTAMLIYIGI 192
I+AS V SV GCGFL MALV++VQ+KLG L +VPLV LVP+A++IY+ +
Sbjct: 139 IVASCVASVLGCGFLTMALVDLVQIKLGPL-ECKRSFHALAAIVPLVVLVPSALIIYVFL 197
Query: 193 VFYAF 197
V YAF
Sbjct: 198 VLYAF 202
>AT2G01580.1 | chr2:265181-265756 REVERSE LENGTH=192
Length = 191
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 84/139 (60%), Gaps = 14/139 (10%)
Query: 24 ALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADRLGSACAAGDRVESDLVLFHVLAF 83
ALDGIV+ NSLFT+A F+G+++ D P DR + C+AG VE DLV+F V++F
Sbjct: 32 ALDGIVSANSLFTVAVFVGISF----DQPSDLTLTDR--TECSAGRDVERDLVVFEVISF 85
Query: 84 ACFLFSSIVALCLKQIVRTHPHYRLRXXXXXXXAVSRTAMINRVALRVGILASAVGSVCG 143
A FLFSS+VA +K + A INR LR G++ +A GS+ G
Sbjct: 86 AFFLFSSLVAQGMKLAINLLNSKETDEVF--------KANINRDVLRFGVVGAAGGSILG 137
Query: 144 CGFLMMALVNVVQVKLGRL 162
C FL++++V+V+Q++LG L
Sbjct: 138 CVFLLLSIVDVIQLRLGLL 156
>AT3G07510.1 | chr3:2393895-2394464 REVERSE LENGTH=190
Length = 189
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 101/178 (56%), Gaps = 16/178 (8%)
Query: 20 IHITALDGIVNVNSLFTLAAFIGLAWRPSADGPELAGGADRLGSACAAGDRVESDLVLFH 79
+H++ALDG+VNVNSLFT+A F+GL S P R S+C A V L++F
Sbjct: 26 VHVSALDGLVNVNSLFTIAVFVGL----SLATPGQHSLEQR--SSCDASADVAKKLLVFE 79
Query: 80 VLAFACFLFSSIVALCLKQIVRTHPHYRLRXXXXXXXAVSRTAMINRVALRVGILASAVG 139
V++F+ FLFSS+VA LK + + A IN LR G++ASAVG
Sbjct: 80 VVSFSFFLFSSLVAQGLKLALNLLNSKDVNEIF--------RAHINIKVLRWGMMASAVG 131
Query: 140 SVCGCGFLMMALVNVVQVKLGRLXXXXXXXXXXXXVVPLVSLVPTAMLIYIGIVFYAF 197
SV GC FLM+++VNV+Q++LG L V LV+LV +A+LIYI YAF
Sbjct: 132 SVMGCLFLMLSMVNVIQIRLGLL--SCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.142 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,011,458
Number of extensions: 91354
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 4
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 109 (46.6 bits)