BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0168100 Os10g0168100|Os10g0168100
         (88 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0168100                                                      178   9e-46
Os06g0476800  Conserved hypothetical protein                       86   5e-18
Os12g0534400  Conserved hypothetical protein                       75   1e-14

>Os10g0168100 
          Length = 88

 Score =  178 bits (451), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MAAAVDGAVQQRRRAPPTAKGGGVQATGGRLNHHPLPPLLEMAMRMPLQTAVVTDICRQG 60
          MAAAVDGAVQQRRRAPPTAKGGGVQATGGRLNHHPLPPLLEMAMRMPLQTAVVTDICRQG
Sbjct: 1  MAAAVDGAVQQRRRAPPTAKGGGVQATGGRLNHHPLPPLLEMAMRMPLQTAVVTDICRQG 60

Query: 61 GLENMQHFVGSMSICFIGVVLLVGFVHA 88
          GLENMQHFVGSMSICFIGVVLLVGFVHA
Sbjct: 61 GLENMQHFVGSMSICFIGVVLLVGFVHA 88



>Os06g0476800 Conserved hypothetical protein
          Length = 126

 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/42 (97%), Positives = 42/42 (100%)

Query: 1  MAAAVDGAVQQRRRAPPTAKGGGVQATGGRLNHHPLPPLLEM 42
          MAAAVDGAVQQRRRAPPTAKGGGVQATGGRLNHHPLPPLLE+
Sbjct: 1  MAAAVDGAVQQRRRAPPTAKGGGVQATGGRLNHHPLPPLLEV 42



>Os12g0534400 Conserved hypothetical protein
          Length = 43

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 37/41 (90%)

Query: 48 LQTAVVTDICRQGGLENMQHFVGSMSICFIGVVLLVGFVHA 88
          L  AVVTDICRQGGLEN+QHFVGS  ICFIGVVLLVGFVHA
Sbjct: 3  LSRAVVTDICRQGGLENLQHFVGSTLICFIGVVLLVGFVHA 43



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,565,707
Number of extensions: 148667
Number of successful extensions: 848
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 3
Length of query: 88
Length of database: 17,035,801
Length adjustment: 58
Effective length of query: 30
Effective length of database: 14,007,389
Effective search space: 420221670
Effective search space used: 420221670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)