Os12g0534400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0534400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.13 | 0.5 | 7.07 | -2.92 | 1.12 | 1.5 | -0.435 | -3.44 | -0.333 | 5.19 | 20.41 | 12 | -- | -- |
| 122.25 | 0.515 | 7 | -2.38 | 1.08 | 1.66 | 0.111 | -- | -0.159 | 5.25 | 14.78 | 8 | -- | -- |
| 113.54 | 0.496 | 7.07 | -2.88 | 1.12 | 1.51 | -- | -3.21 | -0.323 | 5.17 | 20.4 | 12 | -- | -- |
| 122.33 | 0.515 | 7.01 | -2.38 | 1.08 | 1.66 | -- | -- | -0.168 | 5.25 | 14.12 | 9 | -- | -- |
| 165.74 | 0.603 | 7.04 | -2.62 | -- | 0.781 | -- | -2.77 | -0.15 | -- | 18.33 | 9 | -- | -- |
| 147.93 | 0.57 | 6.95 | -2.05 | 0.81 | -- | -0.54 | -- | 0.0663 | 6.95 | -- | -- | -- | -- |
| 148.65 | 0.571 | 6.95 | -2.06 | 0.81 | -- | -- | -- | 0.0671 | 6.84 | -- | -- | -- | -- |
| 173.19 | 0.616 | 6.99 | -2.19 | -- | 0.832 | -- | -- | -0.0271 | -- | 14.12 | 9 | -- | -- |
| 255.95 | 0.749 | 6.91 | -- | 0.893 | 0.506 | -- | -- | 0.237 | 6.23 | 23.47 | 27 | -- | -- |
| 183 | 0.632 | 6.97 | -2.04 | -- | -- | -- | -- | 0.0827 | -- | -- | -- | -- | -- |
| 260.2 | 0.755 | 6.9 | -- | 0.787 | -- | -- | -- | 0.296 | 7 | -- | -- | -- | -- |
| 292.18 | 0.799 | 6.92 | -- | -- | 0.155 | -- | -- | 0.288 | -- | 19.7 | 5 | -- | -- |
| 292.74 | 0.799 | 6.92 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 21 |
| 18 | 112.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 48 | 113.30 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 52 | 113.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 66 | 113.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 67 | 113.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 72 | 114.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 104 | 114.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 114 | 115.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 137 | 115.28 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 202 | 115.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 205 | 115.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 215 | 115.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 223 | 116.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 239 | 116.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 242 | 116.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 244 | 116.12 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 245 | 116.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 252 | 116.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 260 | 116.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 289 | 116.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 300 | 116.38 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 330 | 116.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 337 | 116.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 345 | 116.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 378 | 116.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 380 | 116.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 400 | 116.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 404 | 116.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 409 | 116.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 431 | 116.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 436 | 116.77 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 441 | 116.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 22 |
| 473 | 116.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 482 | 116.84 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 14 |
| 492 | 116.86 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 495 | 116.87 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 513 | 116.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 514 | 116.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 541 | 117.00 | radiation | 1 | 4320 | > th | dose independent | sin | 14 | NA |
| 542 | 117.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 549 | 117.03 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 567 | 117.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 579 | 117.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 589 | 117.13 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 602 | 117.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 603 | 117.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 616 | 117.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 659 | 117.27 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 678 | 117.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 679 | 117.31 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 21 |
| 727 | 117.40 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 756 | 117.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 836 | 117.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 934 | 117.65 | radiation | 1 | 4320 | < th | dose independent | sin | 14 | NA |
| 947 | 117.66 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 966 | 117.68 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 975 | 117.69 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 3 |