Os10g0168100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0168100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.79 | 0.481 | 9.04 | -1.96 | 2.32 | -1.6 | -1.47 | 3.33 | 0.135 | 4.75 | 0.3673 | 620 | -- | -- |
| 104.4 | 0.476 | 8.99 | -1.94 | 2.92 | -2.1 | 1.52 | -- | 0.171 | 4.33 | 0.4013 | 539 | -- | -- |
| 103.51 | 0.474 | 9.04 | -1.92 | 2.68 | -1.86 | -- | 1.63 | 0.147 | 4.35 | 0.3327 | 545 | -- | -- |
| 109.2 | 0.487 | 9.02 | -1.88 | 2.93 | -2.08 | -- | -- | 0.165 | 4.28 | 0.36 | 529 | -- | -- |
| 154.64 | 0.579 | 9.07 | -1.85 | -- | -0.639 | -- | 0.888 | 0.208 | -- | 0.3838 | 1392 | -- | -- |
| 116.8 | 0.507 | 9.02 | -1.69 | 0.909 | -- | 1.13 | -- | 0.251 | 4.51 | -- | -- | -- | -- |
| 120.26 | 0.514 | 9.03 | -1.7 | 0.917 | -- | -- | -- | 0.245 | 4.55 | -- | -- | -- | -- |
| 152.54 | 0.575 | 9.05 | -1.93 | -- | -1.03 | -- | -- | 0.166 | -- | 0.3105 | 1394 | -- | -- |
| 194.71 | 0.653 | 8.99 | -- | 0.998 | -0.247 | -- | -- | 0.428 | 3.51 | 1.586 | 488 | -- | -- |
| 165.1 | 0.6 | 9.03 | -1.66 | -- | -- | -- | -- | 0.269 | -- | -- | -- | -- | -- |
| 196.01 | 0.655 | 8.98 | -- | 0.885 | -- | -- | -- | 0.434 | 4.6 | -- | -- | -- | -- |
| 198.51 | 0.656 | 8.98 | -- | -- | 0.95 | -- | -- | 0.486 | -- | 3.722 | 611 | -- | -- |
| 237.78 | 0.72 | 8.99 | -- | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 3 | 104.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 4 | 104.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 5 | 104.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 7 | 104.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 12 | 104.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 13 | 104.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 17 | 104.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 18 | 104.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 21 | 104.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 26 | 104.52 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 31 | 104.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 42 | 104.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 57 | 104.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 65 | 104.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 113 | 105.20 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 121 | 105.24 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 17 |
| 174 | 105.38 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 246 | 105.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 251 | 105.50 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 275 | 105.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 340 | 105.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 353 | 105.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 388 | 105.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 417 | 105.87 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 442 | 105.96 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 445 | 105.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 446 | 105.97 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 466 | 106.01 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 502 | 106.12 | humidity | 80 | 720 | > th | dose independent | sin | 22 | NA |
| 543 | 106.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 565 | 106.21 | radiation | 1 | 720 | < th | dose independent | sin | 0 | NA |
| 702 | 106.57 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 14 |
| 791 | 106.74 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 819 | 106.79 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 853 | 106.87 | radiation | 1 | 30 | < th | dose dependent | rect. | 23 | 19 |
| 919 | 107.04 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 22 |
| 920 | 107.04 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 924 | 107.05 | radiation | 1 | 10 | < th | dose independent | rect. | 23 | 19 |
| 988 | 107.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |