BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0167500 Os10g0167500|Os10g0167500
(703 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0167500 RNA-binding region RNP-1 (RNA recognition moti... 1005 0.0
Os04g0543200 RNA-binding region RNP-1 (RNA recognition moti... 76 8e-14
>Os10g0167500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 703
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/673 (77%), Positives = 520/673 (77%)
Query: 31 VAAEKESDGMEVEDRGEVVSQEATAVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 90
VAAEKESDGMEVEDRGEVVSQEATAVK
Sbjct: 31 VAAEKESDGMEVEDRGEVVSQEATAVKPDEAEEPEEDPEEVGEGAEEAPAAGPGDVAAAA 90
Query: 91 XXXXXXXXXXGDGEPALEVAITAHEPVEEEPKDVMETGXXXXXXXXXXXXXXXXXXXXXX 150
GDGEPALEVAITAHEPVEEEPKDVMETG
Sbjct: 91 AESGPVAMEAGDGEPALEVAITAHEPVEEEPKDVMETGEEAIEPEEDEEPEEAEVEEDEE 150
Query: 151 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKEIADKDSEEAQDEDKHGDNHK 210
MKEIADKDSEEAQDEDKHGDNHK
Sbjct: 151 PEELEMEEEEPEDADSEESMEEEAGSEVSEEEAAADDMKEIADKDSEEAQDEDKHGDNHK 210
Query: 211 GEVADQLSNDEDVGGRENDESPNDELDTSLLVLDSVPDGNDKTLELFVGGLPKDCVEEDI 270
GEVADQLSNDEDVGGRENDESPNDELDTSLLVLDSVPDGNDKTLELFVGGLPKDCVEEDI
Sbjct: 211 GEVADQLSNDEDVGGRENDESPNDELDTSLLVLDSVPDGNDKTLELFVGGLPKDCVEEDI 270
Query: 271 RVVFSQCGEVESIRIVKKRKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHR 330
RVVFSQCGEVESIRIVKKRKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHR
Sbjct: 271 RVVFSQCGEVESIRIVKKRKRIAFVRYADISATKKALTEFKDGIKVNGKSVRVSVAEPHR 330
Query: 331 KSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYGNIQKVNILRSKKKVVSFVEFSSRK 390
KSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYGNIQKVNILRSKKKVVSFVEFSSRK
Sbjct: 331 KSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYGNIQKVNILRSKKKVVSFVEFSSRK 390
Query: 391 SALACVEGISKAKINDREVKLAASLARPQSKVQLANESSKGGFNVHSGATXXXXXXXXXX 450
SALACVEGISKAKINDREVKLAASLARPQSKVQLANESSKGGFNVHSGAT
Sbjct: 391 SALACVEGISKAKINDREVKLAASLARPQSKVQLANESSKGGFNVHSGATSKSPDKSKMK 450
Query: 451 XXQTDETIVKKSQLKLLKGDESKLPSKDDVEVPQTSTHSKGKAKVGKRQNTSIDERPSKK 510
QTDETIVKKSQLKLLKGDESKLPSKDDVEVPQTSTHSKGKAKVGKRQNTSIDERPSKK
Sbjct: 451 KDQTDETIVKKSQLKLLKGDESKLPSKDDVEVPQTSTHSKGKAKVGKRQNTSIDERPSKK 510
Query: 511 SRESGESKLTSQDEGEVGKSKSKSVNERPLKKASKNRDDVKLPSQSGLEEPQXXXXXXXX 570
SRESGESKLTSQDEGEVGKSKSKSVNERPLKKASKNRDDVKLPSQSGLEEPQ
Sbjct: 511 SRESGESKLTSQDEGEVGKSKSKSVNERPLKKASKNRDDVKLPSQSGLEEPQTSNRSKRK 570
Query: 571 XXXXXXXXXXXNERPVEKAWKNRNIKHPAGSRYVTSNQAYPTAPHAGFIPPSSRVQRTPA 630
NERPVEKAWKNRNIKHPAGSRYVTSNQAYPTAPHAGFIPPSSRVQRTPA
Sbjct: 571 RKVRKNRSTTVNERPVEKAWKNRNIKHPAGSRYVTSNQAYPTAPHAGFIPPSSRVQRTPA 630
Query: 631 RDHQRTAPYNIRQISGSPYARERVAPRPAYSVHTSNXXXXXXXXXXXXLXXXXXXXXNVH 690
RDHQRTAPYNIRQISGSPYARERVAPRPAYSVHTSN L NVH
Sbjct: 631 RDHQRTAPYNIRQISGSPYARERVAPRPAYSVHTSNAAGYEAGYAYTYLPPPPPPPPNVH 690
Query: 691 ALVVQFKNVVLGK 703
ALVVQFKNVVLGK
Sbjct: 691 ALVVQFKNVVLGK 703
>Os04g0543200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 774
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 17/200 (8%)
Query: 256 LFVGGLPKDCVEEDIRVVFSQCG--EVESIRIVKKRKRIAFVR-YA--DISATKKALTEF 310
LFVG + K +E ++ G + + +V+ R YA + S +A+ F
Sbjct: 272 LFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAF 331
Query: 311 K-----DGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGY 365
+ D + +S +VS A+ + + ++ + +V+TV+++ P SWDE +++ + Y
Sbjct: 332 RRLQKRDVVFGVDRSAKVSFADSYPEVDDE-IMAQVRTVFIDGLPPSWDEDRVKKYLKKY 390
Query: 366 GNIQKVNILR----SKKKVVSFVEFSSRKSALACVEGISKAKI--NDREVKLAASLARPQ 419
G I+KV + R +K+K FV F + +A+AC +GI+ ++I D + K+ A L+RP
Sbjct: 391 GAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEIGEGDSKAKVRARLSRPL 450
Query: 420 SKVQLANESSKGGFNVHSGA 439
+ +G F V GA
Sbjct: 451 QRPPRMKHGLRGNFRVGQGA 470
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Query: 252 KTLELFVGGLPKDCVEEDIRVVFSQCGEVESIRIV-----KKRKRIAFVRYADISATKKA 306
K E+FVGGL KD E D+R VF + GE+ +R++ KK K AF+RYA + ++A
Sbjct: 188 KEFEVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRA 247
Query: 307 LTEFKDGIKVNGKSVRVSVAEPHRKSSEQKALTKVKTVYLEHFPRSWDERNIEECCEGYG 366
++E K+ V GK + VA H T+++ + ++W + +++E + YG
Sbjct: 248 VSELKN-PSVRGK--QCGVAPSHDND----------TLFVGNICKTWTKEHLKEKLKSYG 294
Query: 367 --NIQKVNILR-----SKKKVVSFVEFSSRKSALACVEGISKAKI---NDREVKLAASLA 416
N + ++ + + +EFS+R A+ + K + DR K++ + +
Sbjct: 295 VENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRSAKVSFADS 354
Query: 417 RPQ 419
P+
Sbjct: 355 YPE 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.126 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,522,468
Number of extensions: 682379
Number of successful extensions: 3003
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3011
Number of HSP's successfully gapped: 5
Length of query: 703
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 595
Effective length of database: 11,396,689
Effective search space: 6781029955
Effective search space used: 6781029955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 160 (66.2 bits)